Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2525 |
Symbol | |
ID | 4921230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2977355 |
End bp | 2979325 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640164119 |
Product | decaheme cytochrome c |
Protein accession | YP_001094650 |
Protein GI | 127513453 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000837992 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAACG TACAAAATAA TAAATTTAAG CTGCTACTCG CAGCAGGTGC CGTCTCCATG GCTCTCACTG GTTGTGGTGG CAGCGACGGT AGTGATGGTA ATCCTGGCAA CCCAGGCGGC CCAGCAGCCG ATGCCATTGA AGTACTTCAC CTTGATGTCA CCAAGGTTGA ATACGACAAC GGCACACCCA CAATCACAGT CTTTGCGACC AACCAGGAAG ATCTTCCTGT TATCGGTCTG AAAGATCTTG AAGTGAAAAA AGTGGTTCAG CTACTGCCAC AAGGCACGAC CGGTGCAGGT AATGCCGCCG AATGGCAATA TATCGGCTCA CAAAAAGCCT TTACCGACCA CAAGAATGGT AACTACACCT TCACCATCGA CGTGGAAGGC TACAACCCAG AGCTGACCCA AAGATACAAT ATCGTCGCCA AGGCCTCGAC ACTGCTCGAC GGCGTCACCC TGGTGCCGCA AACCGAGATC GCCGAAGACT TCTCTGGCGA AGGTTATGAG CCACTCTACA CCAAGAATGT GGTCTCAACC GCCAGCTGTA ACAGCTGTCA CGCCGAAGGA CAGAAGATCT ACCACAGCTA CACCAGCGTA GAGACCTGTG TCTCTTGTCA CACCCAAGAG ATGGCTGATG AGAAAGGTAA GCCACAAGTT GCCTTTAACC ATCTGATCCA CAACGTCCAC AACGACGCTA AGATGTATGG CCGCAACATG GACCAGAGCG CCGAAACTGC GCACCACATA GTCCAGGACA ACTGCCAAGC CTGTCACGTT CAGTCTGACG AGCTCACCGA GTGGGGCAAC TGGTCACGTA TTCCAACCAT GGAAACCTGT ACTAGCTGTC ACGTCAACAT CGACTTTAAG GCGGGTAAAG GCCACTCTCA GCAAAACGAC AACAGCAACT GTGTTGCCTG TCATAACGCG AGCTGGACTG CCGAGCTGCA CACTCAAGCT GGTAGCGACA AGAAAGCCCT TATCGACCAA TACGGCCTGA ATGTTGAGTC AACCATCAAC ACCGAAGGCA CTGCTGCCAC CATCAGCGTT CAAGTGGTCG ATGCCAGCGG CGCCGCCGTT GATATCAACA CCATTCTGCC TATGGTACAG CGCTTCGAGA TCGTGACTAA CGTAGGTCCT AACAATGTAA CCCTAGGTTA TGGCGGTAAA GACTCTATCA ACGCCGTGAA GAATGGCGTG GTCGATGCCA AGGCGCTAGT CGAAGATGGC AAGCTGGTTT ACACCACTAG CAAAGATCTT AAGCTAGGTG CCAACGGTAT CGACAGCGAG ACCGCCTTTA CCTTCGTTGG CTGGGCAATG TGCTCAGACA AGGGTGAGTT CGTGACCTGT GACGATCCTG CCTTCGACGG TAGCGACACC GACAAGTACA CCGGCATGAA AGCCGACCTT GCCTTCGCCG CACTAGCAGA CAAGGCGCCA AGCATGCGTC ACGTCGACTC AGTGAACTTC ACCGCCTGTG CCTCTTGTCA CACCACAGAG TTTGAAGTGC ACAAGGGTAG CCACCATGCA GGTTTCGTCC TGTCTGAGCA GCTCTCTCAC GCGAAAGACG CCAACGACAT GCCTATCATA GGTGTCGATG CCTGTGTGGC CTGTCACACA CCTGACGGCA CATACGCTGG CGGCGCGAAC AAGGGTGCCC TGGAGATGAA GCTGCACGTG GTACACGGCG AGCAAGGCAT CATCAAAGAT TGTGCCCAGT GTCACAACGA CTTCAACCTG GACGCCTTCA AGGCTAAAGG TGCCCTGGCA ACTGCTGCTG GCCAATACAG CACACCTATC GCCGCGACTT GTACTTCTTG TCACACAAGC GATAGCGTCA AGGCCCACGC CGAAAGCCAA GGTGCCATCA TCAATGGTGC TAAAGATGTC GCTAACGATG CGGCGCAGCT AGAAACTTGT TTCTTCTGCC ACGCACCTGT TATCGAAGAT CACACTGCGG TGAAGATGTA A
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Protein sequence | MMNVQNNKFK LLLAAGAVSM ALTGCGGSDG SDGNPGNPGG PAADAIEVLH LDVTKVEYDN GTPTITVFAT NQEDLPVIGL KDLEVKKVVQ LLPQGTTGAG NAAEWQYIGS QKAFTDHKNG NYTFTIDVEG YNPELTQRYN IVAKASTLLD GVTLVPQTEI AEDFSGEGYE PLYTKNVVST ASCNSCHAEG QKIYHSYTSV ETCVSCHTQE MADEKGKPQV AFNHLIHNVH NDAKMYGRNM DQSAETAHHI VQDNCQACHV QSDELTEWGN WSRIPTMETC TSCHVNIDFK AGKGHSQQND NSNCVACHNA SWTAELHTQA GSDKKALIDQ YGLNVESTIN TEGTAATISV QVVDASGAAV DINTILPMVQ RFEIVTNVGP NNVTLGYGGK DSINAVKNGV VDAKALVEDG KLVYTTSKDL KLGANGIDSE TAFTFVGWAM CSDKGEFVTC DDPAFDGSDT DKYTGMKADL AFAALADKAP SMRHVDSVNF TACASCHTTE FEVHKGSHHA GFVLSEQLSH AKDANDMPII GVDACVACHT PDGTYAGGAN KGALEMKLHV VHGEQGIIKD CAQCHNDFNL DAFKAKGALA TAAGQYSTPI AATCTSCHTS DSVKAHAESQ GAIINGAKDV ANDAAQLETC FFCHAPVIED HTAVKM
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