Gene Shew_2525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2525 
Symbol 
ID4921230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2977355 
End bp2979325 
Gene Length1971 bp 
Protein Length656 aa 
Translation table11 
GC content53% 
IMG OID640164119 
Productdecaheme cytochrome c 
Protein accessionYP_001094650 
Protein GI127513453 
COG category 
COG ID 
TIGRFAM ID[TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.37992e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAACG TACAAAATAA TAAATTTAAG CTGCTACTCG CAGCAGGTGC CGTCTCCATG 
GCTCTCACTG GTTGTGGTGG CAGCGACGGT AGTGATGGTA ATCCTGGCAA CCCAGGCGGC
CCAGCAGCCG ATGCCATTGA AGTACTTCAC CTTGATGTCA CCAAGGTTGA ATACGACAAC
GGCACACCCA CAATCACAGT CTTTGCGACC AACCAGGAAG ATCTTCCTGT TATCGGTCTG
AAAGATCTTG AAGTGAAAAA AGTGGTTCAG CTACTGCCAC AAGGCACGAC CGGTGCAGGT
AATGCCGCCG AATGGCAATA TATCGGCTCA CAAAAAGCCT TTACCGACCA CAAGAATGGT
AACTACACCT TCACCATCGA CGTGGAAGGC TACAACCCAG AGCTGACCCA AAGATACAAT
ATCGTCGCCA AGGCCTCGAC ACTGCTCGAC GGCGTCACCC TGGTGCCGCA AACCGAGATC
GCCGAAGACT TCTCTGGCGA AGGTTATGAG CCACTCTACA CCAAGAATGT GGTCTCAACC
GCCAGCTGTA ACAGCTGTCA CGCCGAAGGA CAGAAGATCT ACCACAGCTA CACCAGCGTA
GAGACCTGTG TCTCTTGTCA CACCCAAGAG ATGGCTGATG AGAAAGGTAA GCCACAAGTT
GCCTTTAACC ATCTGATCCA CAACGTCCAC AACGACGCTA AGATGTATGG CCGCAACATG
GACCAGAGCG CCGAAACTGC GCACCACATA GTCCAGGACA ACTGCCAAGC CTGTCACGTT
CAGTCTGACG AGCTCACCGA GTGGGGCAAC TGGTCACGTA TTCCAACCAT GGAAACCTGT
ACTAGCTGTC ACGTCAACAT CGACTTTAAG GCGGGTAAAG GCCACTCTCA GCAAAACGAC
AACAGCAACT GTGTTGCCTG TCATAACGCG AGCTGGACTG CCGAGCTGCA CACTCAAGCT
GGTAGCGACA AGAAAGCCCT TATCGACCAA TACGGCCTGA ATGTTGAGTC AACCATCAAC
ACCGAAGGCA CTGCTGCCAC CATCAGCGTT CAAGTGGTCG ATGCCAGCGG CGCCGCCGTT
GATATCAACA CCATTCTGCC TATGGTACAG CGCTTCGAGA TCGTGACTAA CGTAGGTCCT
AACAATGTAA CCCTAGGTTA TGGCGGTAAA GACTCTATCA ACGCCGTGAA GAATGGCGTG
GTCGATGCCA AGGCGCTAGT CGAAGATGGC AAGCTGGTTT ACACCACTAG CAAAGATCTT
AAGCTAGGTG CCAACGGTAT CGACAGCGAG ACCGCCTTTA CCTTCGTTGG CTGGGCAATG
TGCTCAGACA AGGGTGAGTT CGTGACCTGT GACGATCCTG CCTTCGACGG TAGCGACACC
GACAAGTACA CCGGCATGAA AGCCGACCTT GCCTTCGCCG CACTAGCAGA CAAGGCGCCA
AGCATGCGTC ACGTCGACTC AGTGAACTTC ACCGCCTGTG CCTCTTGTCA CACCACAGAG
TTTGAAGTGC ACAAGGGTAG CCACCATGCA GGTTTCGTCC TGTCTGAGCA GCTCTCTCAC
GCGAAAGACG CCAACGACAT GCCTATCATA GGTGTCGATG CCTGTGTGGC CTGTCACACA
CCTGACGGCA CATACGCTGG CGGCGCGAAC AAGGGTGCCC TGGAGATGAA GCTGCACGTG
GTACACGGCG AGCAAGGCAT CATCAAAGAT TGTGCCCAGT GTCACAACGA CTTCAACCTG
GACGCCTTCA AGGCTAAAGG TGCCCTGGCA ACTGCTGCTG GCCAATACAG CACACCTATC
GCCGCGACTT GTACTTCTTG TCACACAAGC GATAGCGTCA AGGCCCACGC CGAAAGCCAA
GGTGCCATCA TCAATGGTGC TAAAGATGTC GCTAACGATG CGGCGCAGCT AGAAACTTGT
TTCTTCTGCC ACGCACCTGT TATCGAAGAT CACACTGCGG TGAAGATGTA A
 
Protein sequence
MMNVQNNKFK LLLAAGAVSM ALTGCGGSDG SDGNPGNPGG PAADAIEVLH LDVTKVEYDN 
GTPTITVFAT NQEDLPVIGL KDLEVKKVVQ LLPQGTTGAG NAAEWQYIGS QKAFTDHKNG
NYTFTIDVEG YNPELTQRYN IVAKASTLLD GVTLVPQTEI AEDFSGEGYE PLYTKNVVST
ASCNSCHAEG QKIYHSYTSV ETCVSCHTQE MADEKGKPQV AFNHLIHNVH NDAKMYGRNM
DQSAETAHHI VQDNCQACHV QSDELTEWGN WSRIPTMETC TSCHVNIDFK AGKGHSQQND
NSNCVACHNA SWTAELHTQA GSDKKALIDQ YGLNVESTIN TEGTAATISV QVVDASGAAV
DINTILPMVQ RFEIVTNVGP NNVTLGYGGK DSINAVKNGV VDAKALVEDG KLVYTTSKDL
KLGANGIDSE TAFTFVGWAM CSDKGEFVTC DDPAFDGSDT DKYTGMKADL AFAALADKAP
SMRHVDSVNF TACASCHTTE FEVHKGSHHA GFVLSEQLSH AKDANDMPII GVDACVACHT
PDGTYAGGAN KGALEMKLHV VHGEQGIIKD CAQCHNDFNL DAFKAKGALA TAAGQYSTPI
AATCTSCHTS DSVKAHAESQ GAIINGAKDV ANDAAQLETC FFCHAPVIED HTAVKM