| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2435 |
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| Symbol | |
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| ID | 4921656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2862004 |
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| End bp | 2863455 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164025 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_001094560 |
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| Protein GI | 127513363 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.015008 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00456377 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATATTG AATTACCGAT ATTAGTTACT TTTTTCGGCT ACCTCATCCT CATGATGGGC
ATTGGCCTTT GGGCATATAA AGCAACCGAC TCTGTCGACG ATTATATTTT AGGTGGCCGC
TCCATGGGAC CGGCCGTCAC CGCACTCAGC GTGGGCGCCT CGGACATGTC CGGCTGGCTG
CTGCTGGGAC TCCCCGGCGC CGTCTACCTC GGCGGCTTGG GCGAAGCCTG GATCGGCATA
GGCCTGGTAT TTGGCGCCTG GCTAAACTGG CTATTCGTGG CCAAACGCCT GCGGATCTAC
ACCCAGTTTA CCGATAACGC CCTCACCCTG CCGGACTTCT TCGAGAAACG CTTCGAAGAC
AAGCAGTCTG TGCTTAAGCT GGTCTCGGCG GTCACCATCC TGGTTTTCTT CACCTTCTAT
ACCTCGTCAG GCATGGTGGG CGGCGCCATA CTGTTCGAGA AGGTGTTTGG CCTAGACTAC
AACCTGGCCC TGCTTATCGG CTCTGGCATC ATAGTGGCCT ACACCTTCGT CGGCGGCTTC
TTCGCCGTGA GCTGGACCGA TTTCTTCCAG GGCTGTCTGA TGCTGATCGC CCTGCTGATC
GTGCCGGTTA CCATCTTCAG CCAGCCTGAG ACCCAGAACG GCATCCATAG CCTGGATCCT
GCCATGCTGT CACTGCTGAG CGACAACACC ACTATGATAG GCCTGGCATC GCTGCTTGCC
TGGGGTCTTG GTTATTTCGG TCAGCCCCAT ATCCTGTCGC GCTTCATGGC CATCGGCAGC
GCCGACGACC TTAAGGTCTC GCGCCGTATC GCCATGAGCT GGATGATAGT GGCGCTGATG
GGCGCACTGG CGACCGGTCT TGCCGGCACC CTCTACTTTG CCGATCAGCC TATCGACAAC
CCAGAGACCA TCTTTATCCA CCTGGCTCAC GCCGCCTTTA ACCCTTGGAT CGGCGGCCTC
CTGGTGGCGG CGATTCTCTC GGCCATCATG AGCACCATCG ACTCACAGCT GCTGGTCTGC
TCTAGTGTGA TCACCGAGGA CTTTTACAAG AAGTGGCTCA GACCCGATGC CAGCAGCAAG
GAGCTGATGA TGATTGGCCG TATCGGCGTG CTGACCATAG CCGTCATCTC TGGCGTCATC
GCCCTGAACC CTGAGAGCAG CGTACTGAGC CTGGTAAGCT ATGCCTGGGC AGGTTTCGGC
GCGGCGTTTG GCCCTGTGGT GATCCTGTCT CTCTTCTGGC GTGGCTATAG CCGCAATGGC
GCGGTAGCAA CTATCATCGT TGGCGCCATC ACAGTGGTGC TGTGGAAACA GAGCACAGGC
GGCATCTTCG ACCTGTATGA GATACTACCT GGTTTCCTCT TCGCCACCCT GGCCGGTGTC
TTAGTCAGCC TGGTCTCGGC GCCAGCCGAC AGCACCCGCG AACAATTTGA GCAATTTAGC
CAGAAACTCT GA
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| Protein sequence | MNIELPILVT FFGYLILMMG IGLWAYKATD SVDDYILGGR SMGPAVTALS VGASDMSGWL
LLGLPGAVYL GGLGEAWIGI GLVFGAWLNW LFVAKRLRIY TQFTDNALTL PDFFEKRFED
KQSVLKLVSA VTILVFFTFY TSSGMVGGAI LFEKVFGLDY NLALLIGSGI IVAYTFVGGF
FAVSWTDFFQ GCLMLIALLI VPVTIFSQPE TQNGIHSLDP AMLSLLSDNT TMIGLASLLA
WGLGYFGQPH ILSRFMAIGS ADDLKVSRRI AMSWMIVALM GALATGLAGT LYFADQPIDN
PETIFIHLAH AAFNPWIGGL LVAAILSAIM STIDSQLLVC SSVITEDFYK KWLRPDASSK
ELMMIGRIGV LTIAVISGVI ALNPESSVLS LVSYAWAGFG AAFGPVVILS LFWRGYSRNG
AVATIIVGAI TVVLWKQSTG GIFDLYEILP GFLFATLAGV LVSLVSAPAD STREQFEQFS
QKL
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