Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1873 |
Symbol | |
ID | 4924094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2152982 |
End bp | 2155483 |
Gene Length | 2502 bp |
Protein Length | 833 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640163441 |
Product | glucan 1,4-alpha-glucosidase |
Protein accession | YP_001093998 |
Protein GI | 127512801 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | [TIGR01535] glucan 1,4-alpha-glucosidase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000067547 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.14602 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTCTA AGCCAGTACC TTTTACGCGC ACTCTGATCG CCCTCTCCTT GGGCGCCCTG CTTAGCGCCT GTGGCGGCGC CAAGAGTGAT ATCGACGCCG CACCTGCACC AAGTGCCAGC GTATCTGAGA CAATTTCAGT TGCACCGGGC GCGCCCGGCG CTTCCCCTAC CTGGGCCTTT TCCGGCAAAA CAGGGATTGG CACCTCGTTC GAGCCCTATG TGACCAATGC GCAGGGTGCC GATCAGTACC TGAGCAGCCA GGCCAATCCC GTTAGTCGGG TATGGTTCTC ACTGGCGCAG GGGATCCTCA CCGAGACCAT GTATGGGCTT ATCCATAACG CCCAGCTCAA AGAGGCGCAG TTCATCATCA GCGGCAATGG CTTCGTCGAT ACCGAGAAAC ACAACACGGT CACCAGCATA GATTACCTGC ATAAGGATGA AGCAGGGCGA CCATTGTCCC TCGCCTACAA GGTGATAAAC AAAGATATCG AGGGCAAATA TCAGATAGAG AAGCACTTTT TTACCGATCC CGATCGCGAC AGCCTGGTGA TGCAGGTGTT CTTTACCGCC TTCGAGCCGG GGATCACCCC TTATCTCTAC GTCAATCCCC ATATCGACAA CAGCGGCGCC AACGATATCG CCAGCGTGAG CCAAGATGGC AACAGCCTCT TCGCCTACAC GGGCGATAAA GATTCCAGCG TGCTGACCGT GCGCGGTGAC ATTCCCTTTA CGGCAAGTAG CGTGGGCTTT GTCGGCGAGT CAGATGGTCT CACCGATCTT AAGGCCAACG GCGAGCTGAA CTGGCGTTAC GCCAGCACCA GCGCTGATAA GCAAAGCCTA GGTAATGTCG CCATGACGGC GGCGCTGCCT ACTCTGGAGG TGGGCGATGC TAACCGCCCA AGTCTTCGCA CTACCTTAGT GTTTGGCTTC GGCGCAGATA AGGCCAGCAG CGAGCAAAAT GCCAAAGACA CCCTTAAAGA TGGTTATAAC AAGGTCCTCG CCGCCTATAA CGGTGAAGGC GATGCCATCG GCTGGCAGGA CTATCTGCAC TCGCTCTCAA GTCTTAATGC CATGACCGCC AATACCGCCG ATGAGGGCAA GCTACTCTAT ACCAGCGCCA TGGTGCTCAA GGCCCAGGAA GATAAGACCC ACGCCGGCGC CCTTATCGCC TCGCTCTCTA ATCCCTGGGG CGACAGCGTC TCGGCCGTCA CCGGCTCGAC CGGCTACAAG GCCGTCTGGC CGAGGGACTT CTATCAATGC GCCATGGCGT TTCTGGCCAT GGGCGATACC CAAACCCCTA AGGTGGCCTT CGAGTATCTA AAGAAGGTTC AGGTTACGGC AGCGACACCC GGCTATAGCG GCGTGCCCGG CTGGTTCCTA CAGAAGACTC ATGTGGATGG TCAGATAGAA TGGGTCGGCG TGCAGCTGGA TCAGACCGCC ATGCCTATCA TGCTCGGTTG GAAGCTCTGG CAGGCTGGCG TGCTGAGCGA CAATGAGATC GCCAGCTGGT ATCAGACCAT GTTGAAGCCG GCGGCCGATT TTCTGATAAG CGGCGGCGAG GTCAACCTCG ACTGGAACTA CACTCAGATC ACACCCCTTA AGACACAGCA AGAACGTTGG GAAGAGCAGC AAGGCTACTC ACCTTCTACC GCAGCGGCGG TGATAGCAGG GCTGATCACT GCCAGCGATA TCGCCAAGCA GGCAGGCGAT TTAAACTCAA GCGAGAAATA TCTCGCCAGT GCCAAATCAA TGGCCGAAAA GCTCGACTCC TTGGTAGTGA CCCAGCAAGG CCTGCTAAGT GCAGAGGATG GCACAAAGGC GCCTTACTAT CTGCGCCTTG CGCCCAATGG TACGCCGGAC AGTGCAGATA AGCTTGCCGA CAACAATGGC CGCGCAGGCT TAGATCAGCG TGAGGTGTTA GACGGCGGCT TCCTAGAGCT GGTGCGTTAC GGCGTGAAGA GCGCCAACGA CAAGACCATC AACGACACCC TCAAGCTTAT CGATAACACG GCGCTCGAGG ATAATCTCAG AGTCAGGTAT GAATTTACCG CCAAAGATGG CAGCACGTTC CCAGGCTTTA GACGCTACGG CAACGACGGC TATGGCGAAG ACACCGCCAC AGGCGCCAAC TATGCCGAGA GTGGCAGCAA CACTCCTGGG CAACGCGGCA GAGTCTGGCC GTTCTTCACC GGCGAGCGCG CCCACTTCGA ACTGGCCAAG GCGATCGCCG ATGGCACGCT CAATGATGCA AGCAAGGCGC AGCTAGTACA GACCTATGTC AAGGGGATGG AGGCTTTTGC CAATGAGGGA CTGATGCTAC CCGAGCAGGT TTGGGATGGT GTGGGCGACA AGACCCGCTT TAACTATCAG CTTGGCCAAG GCACTAACTC GGCCACCCCG CTTGCCTGGA CCCACGCCGA ATATGTGAAG ATGGTGCGCT CTATCACAGA GGCTAAGGTG TGGGACCACT ACGAGGATGT GGCCAAGGCA CTTAACAACT AG
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Protein sequence | MTSKPVPFTR TLIALSLGAL LSACGGAKSD IDAAPAPSAS VSETISVAPG APGASPTWAF SGKTGIGTSF EPYVTNAQGA DQYLSSQANP VSRVWFSLAQ GILTETMYGL IHNAQLKEAQ FIISGNGFVD TEKHNTVTSI DYLHKDEAGR PLSLAYKVIN KDIEGKYQIE KHFFTDPDRD SLVMQVFFTA FEPGITPYLY VNPHIDNSGA NDIASVSQDG NSLFAYTGDK DSSVLTVRGD IPFTASSVGF VGESDGLTDL KANGELNWRY ASTSADKQSL GNVAMTAALP TLEVGDANRP SLRTTLVFGF GADKASSEQN AKDTLKDGYN KVLAAYNGEG DAIGWQDYLH SLSSLNAMTA NTADEGKLLY TSAMVLKAQE DKTHAGALIA SLSNPWGDSV SAVTGSTGYK AVWPRDFYQC AMAFLAMGDT QTPKVAFEYL KKVQVTAATP GYSGVPGWFL QKTHVDGQIE WVGVQLDQTA MPIMLGWKLW QAGVLSDNEI ASWYQTMLKP AADFLISGGE VNLDWNYTQI TPLKTQQERW EEQQGYSPST AAAVIAGLIT ASDIAKQAGD LNSSEKYLAS AKSMAEKLDS LVVTQQGLLS AEDGTKAPYY LRLAPNGTPD SADKLADNNG RAGLDQREVL DGGFLELVRY GVKSANDKTI NDTLKLIDNT ALEDNLRVRY EFTAKDGSTF PGFRRYGNDG YGEDTATGAN YAESGSNTPG QRGRVWPFFT GERAHFELAK AIADGTLNDA SKAQLVQTYV KGMEAFANEG LMLPEQVWDG VGDKTRFNYQ LGQGTNSATP LAWTHAEYVK MVRSITEAKV WDHYEDVAKA LNN
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