| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1818 |
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| Symbol | |
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| ID | 4924373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2090202 |
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| End bp | 2091911 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163383 |
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| Product | ATP-dependent protease |
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| Protein accession | YP_001093943 |
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| Protein GI | 127512746 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1067] Predicted ATP-dependent protease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00097725 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCAC ATTCCATCGA CGCCGCCGCT TTATCGCCCC AATTTAACTT ACCTAAGGTC
GACCAACTTA AGCCTAACTT ACACAGTCGA CTCCTTGGCC AGGAACGCAC ACTTGATGCC
TTCAACCTAT TAGCTAAGGC CTGCGGCCAG CATATGTATC TGGCCGATCA GAGTGGTATC
GATAGACTCG CCCTCATTTC AGCCCTGGTC GACTATCAGG GACACAGAGC GACCCACTAT
CTTAACCGTT TGGCACCAGA CGCCAGCCTG GCATGGCAGA CCGAGGCGGG TGATGAGTGC
CTATGCAGCG CGAGTAAACC CTATCGCTAT CTGAGCGGCG CCATTAGACG CAGGGATCTC
ATAGGTCATC TCGATGCCCA CAATCCTAAT GTCTATCATC CAGGCGCCAT GGCCGACTGC
GATTACCTGT TTATCTGCGC CGAGTCGCTG TGGAAACGCG AAGCCCTGTG GGAACTAGTA
ATGGAAGCCG CCCATCTCGG TGAATACCAG CTGCACTCTG GTTGGCCAGC AATTCCCCTG
CACAGCAAGA TCATCCTGGT AGGCAGCAGC ACCTTATATA GCGTCAGCTA TCTGGAAGAG
CGTAACTTTC CCGCGGCGTT CTCCCTGCTC GGTGAGTTAG TGGATGAAAT AGATCTCAAT
GAATTTAGCG AACTCGACTA TGGCAACTAT CTAGTCGAAC TGGCAGAAGC CAACCAGCTC
ACGCTGGAAC AGTCGGCGCT GGCACCTTTG TTTAATTACA GTTCCCGCTT GGCAGAGCAT
CAGCGCCACC TGAGCCTTGA GACGCTGGGG ATCAGTCAGC TCATGGTACA GGCCGCCCTC
TACGGCAAGA GCAAGCAACT TAACGGCGAG AACATCGCCA TCGCCCTCGC CCGCCATAAG
ACGCGCCACA ACGCTTCTCA GAGCCTGTCA GCCCAGAGCT TCGATGACAA CTTCATCAAC
CTGCCAACCC AAGGTGCCAT GATAGGCCAG ATCAACGGCC TGACCGTATT GGATGCCGCC
GAATACACCT ATGGTGAGCC GGCGAGGATC ACTGCCGCCG TGCACTATGG CGACGGCGAA
GTGGCCGATA TCGAACGTAA ATCGGAACTT GGCGGCAACA TACACGCCAA GGGCCTGATG
ATCCTCACCT CTTGCCTCTA CCGTATCTTC GGTAAGGATG CGCCGCTGCA TCTTAATGCC
AACATAGTAT TCGAACAGTC ATACCAAGAG ATCGATGGCG ACAGCGCGTC ACTGGCAGAG
TACTGCGCTC TGATGTCGGC CATTGCCGAG CAGCCAATAG AGCAAGGTAT CGCCGCCACT
GGCGCCATAG ATCAGTTTGG TCAGGTACAG GCCATTGGCG GTGTTAACGA GAAGATCGAA
GGCTTCTTCG ACCTCTGTCA ACGTAGAGGA CTCACGGGCA CCCAGGGGGT GATCATCCCA
GCCTCTAACG TGCAGCAACT CAACCTGGCT CCAGCCGTGA TAGCCGCCGT CAAGGCAAAA
GAGTTTCACC TGTACCAGGT CGAGCATACA GATCAAGCAG TAGCCATCTT GATGAACAAA
CCCGCAGGCA GCCGAGATGA TAATGGCCAG TTCCCCGAGG AAAGCCTATA TGGCATGGTA
CAGGCGCGAT TAGAAGGACT CGCCGGTTAT CCCGATGAAG AGCGATCTTT TTTTGCCAAC
TTGCTCCATA AACTGAAACT TTCTAGCTGA
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| Protein sequence | MIAHSIDAAA LSPQFNLPKV DQLKPNLHSR LLGQERTLDA FNLLAKACGQ HMYLADQSGI
DRLALISALV DYQGHRATHY LNRLAPDASL AWQTEAGDEC LCSASKPYRY LSGAIRRRDL
IGHLDAHNPN VYHPGAMADC DYLFICAESL WKREALWELV MEAAHLGEYQ LHSGWPAIPL
HSKIILVGSS TLYSVSYLEE RNFPAAFSLL GELVDEIDLN EFSELDYGNY LVELAEANQL
TLEQSALAPL FNYSSRLAEH QRHLSLETLG ISQLMVQAAL YGKSKQLNGE NIAIALARHK
TRHNASQSLS AQSFDDNFIN LPTQGAMIGQ INGLTVLDAA EYTYGEPARI TAAVHYGDGE
VADIERKSEL GGNIHAKGLM ILTSCLYRIF GKDAPLHLNA NIVFEQSYQE IDGDSASLAE
YCALMSAIAE QPIEQGIAAT GAIDQFGQVQ AIGGVNEKIE GFFDLCQRRG LTGTQGVIIP
ASNVQQLNLA PAVIAAVKAK EFHLYQVEHT DQAVAILMNK PAGSRDDNGQ FPEESLYGMV
QARLEGLAGY PDEERSFFAN LLHKLKLSS
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