Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1805 |
Symbol | |
ID | 4924396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2067704 |
End bp | 2069752 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640163366 |
Product | hypothetical protein |
Protein accession | YP_001093930 |
Protein GI | 127512733 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000127719 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAACG TTAAAAATGG CTTTAACAAG TCAGCGCTAG CTTTGGGGAT CGTCGCAGCG TTGAGTATTG GAGCGACTAC GGGCGTGCAA GCCGTGTCGT TCGATTGGGG AGAAGTTCAA GGTTCGTTCG ATTCAACATT CAGTGCCGGT GCAAGTTGGC GTGTTGAGGA GCGAGACTGG GATAATCAGA TCGGTAAGGT GAATCACCCG CGCTTTGACT GGTCAAACTA TACCGCATTC GGTAACACCA AATATACTTC GGCCGAGATT TGGGCTCAGC CAGGTTCCTA CTCGAGTAAT GGTGATTTGA GTAACATGCT CTACTCTCAG GGTGACGTAA CCTCTATGGT GTTCAAGGGA TTGCATGAAC TGTCACTCAA ATATAAGAAT TTCGGTCTGT TTGCCCGTGG CATGTATTTC TACGACCAGA AGGCCAACAA CGGTAGCTAT GGTTATAGCG ATCCGATAAC CGGCAAAGAG TATGATCCTT GTGCCGACTC CGAAGCCTCT AAAGTACAGT GTAAAGATGT GCGCCTGTTA GATGCCTTCA TCTATGGCGA TTTCGATCTT AACGATGGTG CCAACCCACT TAGCGTCCGA ATCGGTAACC AGGTGGTGTC TTGGGGTGAA AGCACCCTGA TCCCGCACGG TATTGGTGTG ATCAACCCAG TCGATCTTAA CATTCTCAAT GCGCCGGGCG CCGAGCTTAA AGAAGCCTTC AGACCTCAGG GGATGATCTG GGCGTCACTG GGGATAACCG AATCGCTCTC GGTTGAAGCC TTCTATCAAT ATGATTGGGA ACCGGTTTGG GTGCCGACTC CGGGCTCTTA CTTCTCAACT AACGATTTCG CCGGCTACGG CGGCTATTCG CAAAATGCGC AGCTGGGCTT CAACGCCAAC CCTGATATTA ATCTCGACTT CTTGATCGGC GAGTATCAGA AGCTGGCGGC CATGGTGGCA TCGGGTCAAT ATGATGCGGC GACACTGGGT TCATTGGCAC TGGCTTATCC GACTAAGGTG ACCCTGATGC AAGATCAGGC GAGCGCCAGC GACTCGGGCC AGTACGGTAT CAAGCTAGGT TACTATGCGC CAGAGCTGGG GGAAACCGAG TTTGGTTTCT ACTACATGAA CTATCATAGT CGTCGTCCGC TGATCAGCGG CACCGCGGCT AACTTTACCC AGGAAGCGAT TGGTAAAGAC TTAGCGACTC TGGCAGCCCT TGGGGCAACT GGTGGTACGG TCGATCGTCA GACACTGCTG GGTCTAGAGA CCTTCTCTAA GGCACAGATC GAATACCCAG AAGATATCAA GCTCTATGGC TTTAGCTTCA ACACCCTGAT TGGCGATACT TCTGTGGCCG GTGAGATCGC TCACCGTCAA GATGAGCCGC TACAGATCGA TGACGTGGAA CTCCTGTTTG CCGCCATGCC ACAGCAGCTG GCCAATGCGG GATTGCGTCC AGAGTTTGAT GGCATTTCTC AGGTGAAAGG CATTGGTTCT GGTGAAGCGG CCGAGGGTTA TATCCGCCGT GATACGACTC AGGCACAGGT GACCTTTACC CATCTATTTG GTCCAACTCT GGGTACCGAT AACCTGGTGA TGCTGGCCGA GGTTGGTGGT GTGTGGATCC ACGATATGCC AAGTTTCGAT GAGCTGCGTC TCAATGGCCC AGGTACTGCG CGCTCTGGCG GCAACCCAAA TATGCCTGGC ATCATAGAGG CAGTTCACAA TGGTCCTGAG ACTAACCCTT TCCCAACAGA TTTTGCCTGG GGTTATCGTC TGGTGGCCAA GGCCGAATAC AACAACCTGT TTGCCGGGGT CAACATGGCG CCGCGCATCA TCTTCTCACA TGATGTTGAC GGGATCACAC CCGATCCTAT GTTCCTGTTC ACCGAAGGTA AGAAGTCCGT CGCTATCGGC GTGAACTTCG ATTATCAGAG TCGTTGGGGT GCAGATTTCT CCTACAACTC CTTCTTCGGT GGTGTCGGCA CCACGAATCT GATGTCAGAT CGCGATTACG TGTCGTTTAA CATCAAGTAT TCAATCTAA
|
Protein sequence | MKNVKNGFNK SALALGIVAA LSIGATTGVQ AVSFDWGEVQ GSFDSTFSAG ASWRVEERDW DNQIGKVNHP RFDWSNYTAF GNTKYTSAEI WAQPGSYSSN GDLSNMLYSQ GDVTSMVFKG LHELSLKYKN FGLFARGMYF YDQKANNGSY GYSDPITGKE YDPCADSEAS KVQCKDVRLL DAFIYGDFDL NDGANPLSVR IGNQVVSWGE STLIPHGIGV INPVDLNILN APGAELKEAF RPQGMIWASL GITESLSVEA FYQYDWEPVW VPTPGSYFST NDFAGYGGYS QNAQLGFNAN PDINLDFLIG EYQKLAAMVA SGQYDAATLG SLALAYPTKV TLMQDQASAS DSGQYGIKLG YYAPELGETE FGFYYMNYHS RRPLISGTAA NFTQEAIGKD LATLAALGAT GGTVDRQTLL GLETFSKAQI EYPEDIKLYG FSFNTLIGDT SVAGEIAHRQ DEPLQIDDVE LLFAAMPQQL ANAGLRPEFD GISQVKGIGS GEAAEGYIRR DTTQAQVTFT HLFGPTLGTD NLVMLAEVGG VWIHDMPSFD ELRLNGPGTA RSGGNPNMPG IIEAVHNGPE TNPFPTDFAW GYRLVAKAEY NNLFAGVNMA PRIIFSHDVD GITPDPMFLF TEGKKSVAIG VNFDYQSRWG ADFSYNSFFG GVGTTNLMSD RDYVSFNIKY SI
|
| |