| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1625 |
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| Symbol | |
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| ID | 4923252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1857730 |
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| End bp | 1859106 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163187 |
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| Product | L-serine dehydratase 1 |
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| Protein accession | YP_001093751 |
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| Protein GI | 127512554 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0594859 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.120267 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAGCG TTTTTGACAT GTTTAAAATT GGTATCGGGC CCTCAAGCTC CCATACCGTA
GGCCCGATGA AAGCGGGTAA TATCTTCATT CAAGATTTAG AAAAACATGG TCATCTAGCA
GAAACAGATG AGCTGAGATC TGAGCTGTTT GGCTCACTCG GCCAAACTGG TAAGGGCCAC
GGCACGGGTA AGGCCGTGAT CTTAGGCCTG ATGGGCGAAG CCCCTGAAAC CGTTGATACC
GACAAGATCG ATGCCACCCT GGCACAGGTT CATGACACAC AAAGCTTAAC CATGCCAAAC
AACAAGGTAG TGCGCTTCAG CCGTGAAGAT GGCATCACCT ACCACAGACG CAAGAGTCTG
CCGGCCCACG CCAATGCCAT GACCCTCTAC GCCTATGCCA AGGGCAACTG CATCTATCAG
CGTACCTATT ACTCTGTCGG TGGCGGCTTC ATCTTAGATG AAGATGAAAT TCTGGCCCAG
GATGCCTCGC CAGCCTCCCC TATCGAAGCC GCGCCCTATG ACTTTAACAG CGCCGCCGAG
CTGCTGGATA TGTGTGTCGA GAACGGCCTG AGCATCTCTG CGCTGATGAT GGAGAACGAA
CTCTCTATTG CCAGCGAGAA AGAGGTGAAG GAGCGTCTGT GGACCATATG GCAGACCATG
AAAAGCTGCG TCGAGCGCGG TTATCAGAAG GAAGGCATAC TCCCGGGCGG GCTGAAACTC
AGACGCCGCG CCCCGGCGCT CTACCGCCGC CTCAAGGCCG AGAGCAAGAC AGTGGTCGAT
CCGCTCACCG CCATGGACTG GGTCGATCTG TTTGCCCTGG CCGTGAACGA GCAAAATGCC
GCAGGCGATC GCGTGGTGAC TGCGCCGACC AACGGCGCCG CCGGCATCAT CCCTGCCGTA
CTCTGCTACT ACGACACCTT CGTTCAAGAG GTGGATCTGG ATATCTGCTG TCAGTACCTG
TTGACCGCAG CCGCCATCGG CATTCTCTAC AAGAAGAACG CCTCTATCTC AGGCGCCGAA
GTGGGCTGTC AGGGTGAAGT CGGCGTGGCC TGCTCTATGG CCGCCGCCGC GCTCACAGAG
ATCATGGGCG GCACGGTTGA ACATGTGGAG AACGCCGCCG AGATCGGCAT GGAGCACAAC
CTGGGGCTGA CCTGCGACCC AGTCGGAGGC TTGGTGCAGG TGCCTTGCAT CGAGCGTAAC
GCCATGGGCG CGGTGAAGGC AATCAACGCC TCACGCCTGG CGATGCGCGG CGACGGCAAC
CATAAGGTCT CTCTGGATAA GGTGATCAAG ACCATGATGG ATACCGGCAA GGATATGCGC
AGCAAGTACA AGGAAACCGC CAAGGGCGGC CTGGCGGTTA ACATAGTCGA GTGTTAA
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| Protein sequence | MISVFDMFKI GIGPSSSHTV GPMKAGNIFI QDLEKHGHLA ETDELRSELF GSLGQTGKGH
GTGKAVILGL MGEAPETVDT DKIDATLAQV HDTQSLTMPN NKVVRFSRED GITYHRRKSL
PAHANAMTLY AYAKGNCIYQ RTYYSVGGGF ILDEDEILAQ DASPASPIEA APYDFNSAAE
LLDMCVENGL SISALMMENE LSIASEKEVK ERLWTIWQTM KSCVERGYQK EGILPGGLKL
RRRAPALYRR LKAESKTVVD PLTAMDWVDL FALAVNEQNA AGDRVVTAPT NGAAGIIPAV
LCYYDTFVQE VDLDICCQYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAAALTE
IMGGTVEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAVKAINA SRLAMRGDGN
HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC
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