| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1181 |
|---|
| Symbol | |
|---|
| ID | 4922899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1370809 |
|---|
| End bp | 1371939 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162715 |
|---|
| Product | PepSY-associated TM helix domain-containing protein |
|---|
| Protein accession | YP_001093310 |
|---|
| Protein GI | 127512113 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCGTC TCCTATGGAA ATGGCATGGT TGGCTCGGAC TCTTCGCCGC CCTACCGCTA
TTTATCATCG CTCTGACCGG CAGTGTGTTG GTGTTTAAGA GCGAGCTCGA ACACCTATTG
ATGCCGGAAA AGGTGCTCGC CGCCAGCGAG ACCCGCCTGA GTTTCACCCA GCTACTGAGG
TCGGCAGATG AGGCGTTGCC ACAACATGAA ATTCTTGGCT GGCAGTTTGC ACCTAACGCC
GGCGAGGCAG ACAAGCTCTA TGTCGCCAAG CAAGGCACCT ACGACTGGCA ACTCCTGTTT
GTCGACCCTA GCCAAGGCAG CCTACTGAGC CAACCTGTCG GCCTGAGTCA CTACCTGCTG
GACTGGCTGT TGGAGCTGCA CTACACCCTG CTTGCGGATC ATCTGGGGCT AGCGGTTACT
GCATTAGTAT CTATCTTGCT GATCTTGCTC TCCTTATCTG GGTTTATATT ACACCGTCAG
TTTTGGCGAA CCTTTTTCAC CCTTAGATGG GGCAAGAGTC TGCGCCTGTT TCTCAGCGAT
AGCCACAAGA TGCTGGGGAT CATAGGTGCG CCACTGTTCC TGATCCTGGG CTTCACCGGT
GCCTGGTGGA ACATAGAGCA CATCATCGAG GAGTGGCACG AACCCGACCC CAAGACCCTA
ATCGTCACCC AGAGTTACTA CAACAAGCAG CTGGATGTGG AAGCGCTGCT GACACAGGCG
ACTCAGGTGA TCCCAGGCTT TCAGACCCAC TATGTGCGCT TCCCCGACAA GAGCTATGCC
GGCATCCACC TTTTTGGCGC CGCCCAAGAT CGCGGCGCGC TTCGCAGCGA CTATGGCTCT
ATCGTCAGTT TCGATGATAA ATCCGGTCAG CTCAGCGCCA GTGTCGATGC CACCAAGGCC
GGCGCACTTT ATCAATTTGT CGATAGTTTC CGCCCGCTGC ATTACGGCAA CTTCGGCGGG
CTGGTCAGCA AAATTATCTG GTGTGTGGTG GGCTTCTTAC CTAGCCTGAT GGCCCTTTCC
GGTTACCTGA TGTGGCGGGC ACGGCGTAAA CCGCAAACAC GGCGCCGCGC AAAACAAACG
ATCGAGAGTC CTAGCAACCG AGACGCTAAA GAAGGCTTGG CCAAGGCCTG A
|
|---|
| Protein sequence | MRRLLWKWHG WLGLFAALPL FIIALTGSVL VFKSELEHLL MPEKVLAASE TRLSFTQLLR
SADEALPQHE ILGWQFAPNA GEADKLYVAK QGTYDWQLLF VDPSQGSLLS QPVGLSHYLL
DWLLELHYTL LADHLGLAVT ALVSILLILL SLSGFILHRQ FWRTFFTLRW GKSLRLFLSD
SHKMLGIIGA PLFLILGFTG AWWNIEHIIE EWHEPDPKTL IVTQSYYNKQ LDVEALLTQA
TQVIPGFQTH YVRFPDKSYA GIHLFGAAQD RGALRSDYGS IVSFDDKSGQ LSASVDATKA
GALYQFVDSF RPLHYGNFGG LVSKIIWCVV GFLPSLMALS GYLMWRARRK PQTRRRAKQT
IESPSNRDAK EGLAKA
|
|---|
| |