| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0644 |
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| Symbol | |
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| ID | 4924271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 732169 |
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| End bp | 733878 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162177 |
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| Product | FHA domain-containing protein |
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| Protein accession | YP_001092775 |
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| Protein GI | 127511578 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.61095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAACA TCTTAGTCAG CACCACCAAG GGCACCAAGG TCGGCGAGTT TCAATGTATC
CACCGCGAAT GCCGTGTGGG TAAAGATCCC GATCAGCTGA TCGTCCTTCG GGGCTTTAAG
ATCTCCAAGC ATCACGCCAC CCTGCGGCAA AATGAGGAGG GGATCTTCAT CGTCGACAAC
AAGAGCCGTA CCGGCGTACG CGTGAACGAT GAGAAACATC AGGAGTTCGG TCCCCTCACC
CTCAACGACA AGATTCAGGT GGGCGATTAC CAGCTCAGGG TACAGAGCAG CGATCCGCAA
TTTCAGGCAA GTGCCCCCGC CGAGACGCCA CCGCCACCTG CAGCGCCCGT CGTGGCACCA
GCCGCTCCCG TGGCCGCTGC TGTAACCTCT GTCGAGGCGC AGCCTCCAAT AGTGACGGAG
CAGAGCGCCC AGATTCAGAG ACGCAACGAG TGGCGCCGCA AGGTGCATAC CGAGCTACTC
AAGCAGATGG ATCTGCGCCG GGTTAACGTT AACGAGATGA GTGATACCGA GCTGCGCGCC
CAGAGTGAGG TGCTGCTCAA GCAGATCATC GACAACTTCA AGTTACCCGA CGACATCGAG
ATCTCGGCGC TGACCAAAGA GGTCTTGGAC GAGACCATAG GCCTAGGGCC GCTCGAGGGG
CTGATTGCCG ACCCGGATGT CACTGAGATC ATGGTCAACA GCCATGATCA GATCTTCTAT
GAGAAGGCGG GTAACCTCTA CCTGTCGGAT ATCGCCTTCT CAGACGATCA GGCGGTACTC
GGCGCCATCG AACGAATCGT GACCCCCATT GGCCGACGTA TCGACGAGAG CTCCCCCATG
GTGGATGCCC GCCTCAAGGA TGGTTCCCGC GTGAATGCGG TGATCCCCCC GCTGGCACTC
AAGGGGCCCT GCATCACCAT ACGTAAATTT ATGCAACGAC GCCTGAGCTG CAACGATCTG
GTGGCCTTTG GCTCCATGAG CCAGGCCATG GCGGAGTTTC TCGAGATCGC CGTGAAGCAG
AAGCGCAACG TCGTCATCTC CGGGGGGACA GGCTCGGGTA AGACTACCCT GCTAAACGTA
CTGTCTAACT TCATCCCAGA CAACGAACGT ATCGTCACCG TGGAAGATGC CGCCGAACTT
CAGCTCTATC AGCCTAACCT GGTCTCCCTC GAGGCCCGTC CCCCTAACCA AGAGGGCAAG
GGTGCCATAG AGATCCGCGA TCTGGTCAAG AACTGCCTAC GGATGCGTCC CGATCGCGTG
GTGATCGGTG AGTGTCGTGG CGGTGAGGCG CTCGACATGT TGCAGGCGAT GAACACGGGT
CACGACGGTT CGCTCACCAC GGCCCACTCC AACTCGCCAA GAGACTGCAT CTCACGTCTC
GAGGTGATGG TGATGATGGC GGGAATGGAT CTACCTGTCA CGGCGATCCG CGAGCAGATC
ACCTCGGCGG TCAACATCAT AGTGCAGCAG TCACGCTTCT GTGACGGTTC GCGCCGGGTC
ACCAGCATCT GTGAGGTTAC TGGCATCGAA GGCACTGTGG TGCAACTGTC GGAGATCTTC
AAATTCCAGC AGACCGGCTT CGACGAGCAG GGCAAGGTAC AGGGCTATTA CACCGCAACC
GGCACTCTGC CCGAGTTTTA CGAACAGCTA AGAAAACAAG GGATCGCCGT GCGTCTGGAT
ATCTTCGACA AGGACAGCCG CTATGAGTAG
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| Protein sequence | MFNILVSTTK GTKVGEFQCI HRECRVGKDP DQLIVLRGFK ISKHHATLRQ NEEGIFIVDN
KSRTGVRVND EKHQEFGPLT LNDKIQVGDY QLRVQSSDPQ FQASAPAETP PPPAAPVVAP
AAPVAAAVTS VEAQPPIVTE QSAQIQRRNE WRRKVHTELL KQMDLRRVNV NEMSDTELRA
QSEVLLKQII DNFKLPDDIE ISALTKEVLD ETIGLGPLEG LIADPDVTEI MVNSHDQIFY
EKAGNLYLSD IAFSDDQAVL GAIERIVTPI GRRIDESSPM VDARLKDGSR VNAVIPPLAL
KGPCITIRKF MQRRLSCNDL VAFGSMSQAM AEFLEIAVKQ KRNVVISGGT GSGKTTLLNV
LSNFIPDNER IVTVEDAAEL QLYQPNLVSL EARPPNQEGK GAIEIRDLVK NCLRMRPDRV
VIGECRGGEA LDMLQAMNTG HDGSLTTAHS NSPRDCISRL EVMVMMAGMD LPVTAIREQI
TSAVNIIVQQ SRFCDGSRRV TSICEVTGIE GTVVQLSEIF KFQQTGFDEQ GKVQGYYTAT
GTLPEFYEQL RKQGIAVRLD IFDKDSRYE
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