Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0440 |
Symbol | |
ID | 4920557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 490170 |
End bp | 491024 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161969 |
Product | methyltransferase type 12 |
Protein accession | YP_001092571 |
Protein GI | 127511374 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000034912 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGTCG CCCCCGCCTA TGGCAAAATA GCCCTCCTAA TTTCAGTCAG CTTTTCCCAT GGGCGTCACT CAGTGCAAGA CAAAAACTTC GATGCATTAG CCGGTAAATT TGCCAAAAAC ATCTACGGCA CGCCTAAGGG CGAAGTCCGC GCCGCCGTGC TGTGGCGGGA TATCTCCCAG GCCATGACAC AACTGCCCGA GGGGCCACTG CGTATTCTGG ACGCCGGCGG CGGCTTCGGC TTCTTCAGCC AGAAGCTGGC CAAGCTTGGC CATAGCGTCA CTCTGTGCGA TATCTCCAGC GAAATGTTGG CCCTGGGTCA GGCGCAGATA ACAGAGTATG AAAATAATAG CGGTGAGAAG CTGGACATCA CACTGCTGCA CGCACCGATA CAATCCCTGA CCCGGGAAGA GCTTGGCCAG TTCGACCTCA TCCTCTGCCA TGCGGTGGCC GAGTGGCTCA GCGATGCCAA GCAGACCCTG GCCGGTCTGA CCCAGCTGTT AAAACCCCAG GGGCTGTTTT CCCTCATGTT CTACAACAAG GAGGCGATGC GCTTTCACAG CCTGATCTCG GGTAACTTCG ACTATGTGGC GGCGGATTTC AAGGTGAAGA AGAAGGTGGG CCTAACCCCA AGCTATCCCC TCTATATCGA CGATGTGCGA GGTTGGGTGA GTGATTGGCA GATGGAGCTG GTGACGGCCT CCGGCGTGCG GGTGATCCAC GACTATCTCA AGACCCACCA GCCCCCTAAT TCAGATTTCA GCCAGCTGCT GGAGATGGAG CTGCAATACT CGACCCACCC CGCCTACATA GGCCTGGGGC GCTACGTTCA CTTCATCACC CGTTGGCAAA GATAG
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Protein sequence | MRVAPAYGKI ALLISVSFSH GRHSVQDKNF DALAGKFAKN IYGTPKGEVR AAVLWRDISQ AMTQLPEGPL RILDAGGGFG FFSQKLAKLG HSVTLCDISS EMLALGQAQI TEYENNSGEK LDITLLHAPI QSLTREELGQ FDLILCHAVA EWLSDAKQTL AGLTQLLKPQ GLFSLMFYNK EAMRFHSLIS GNFDYVAADF KVKKKVGLTP SYPLYIDDVR GWVSDWQMEL VTASGVRVIH DYLKTHQPPN SDFSQLLEME LQYSTHPAYI GLGRYVHFIT RWQR
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