| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0079 |
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| Symbol | |
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| ID | 4923960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 91853 |
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| End bp | 93310 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161590 |
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| Product | TAP domain-containing protein |
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| Protein accession | YP_001092210 |
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| Protein GI | 127511013 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGA CACACAAGCC CAATCTATTG GCCTTTGGCA CACTCGTCAT GGCAACCGCC
CTCCTCGGCG GCTGTAACCA ATCGAGCAAG TCTGACACTA AGAAGGAGGT CACCAGCAAG
GTGGGCACTT ACGCCAGCGT CGACTGCAGT ACGTTCACCA AGAGTAAGGA TCTGCCCAAA
GGCGCCAGCT GCGGCTATCT GACGGTCCCG GAAAAACACG CCATCAAGGG CCAGAGTGCC
TCCAAGAAAA CCATGGAGAT CGCCGTGCTG AAGATCCCGG CGACCAAGAC TGAGGCCAAG
GCCGATCCCG TGGTCTACCT GCAGGGCGGT CCAGGCTACT CGGCCATCGA CAGCCTGGAA
GACTTCACCC AGAGCAAGGC GAAATACCTC TGGAACGACC GCGACTTCTA TCTGGTGGAT
CAGCGCGGCA CAGGCCACGC CAAGCCCGCC TACAAGTGCA CCGAATTTAA CACGGTCAAG
GGCTCAATCG AGCAGGTCAA GGCCTGTAAG GCTCGCCTCA AGGCCAAGGG CGTCGACTTC
AGCGCCTATC AAAGTGTGCA GAGCGCCCAC GACTTCATCA TGCTGAGAAA GGCGCTCAAG
CTCGACAGCT GGAATCTCTA CGGCGCCTCG TACGGCACCC GCTTAGCTGA GACCATCATA
CGCGAAGATA GCCAAGGGGT TCGTAGCGTC ATCCTTGACG GAGTATTCCC CATCGAGGTC
AACGGCCTGT CAGATACGCC CTGGGCCACC TATGCCACGC TGGATCGCAT CGTCGCCAAC
TGCGATGCCT CGATTAATTG TGCATCAGAG ATCCTCAAGC CGATGATCGA GTCCATCATC
GAGCGACTAC AGAATCAGGG GGAGGAGCAG GCAGCCATCC GTTTCGTCAA CTACATCGCC
AGTCTAGCGG GTGATGCCAG GGTCGTCCCC CTGATACTGG CGATCGACAA GGACCTGAAC
ATCATCATCA ATGAGAAAGA CAACGAAGAG GCCGAAGGCT ACTTTGCCCC TATGGCCCTG
TCAGTGGTCT GCGCCGAGGA ATATGCCTTC CTCAACCAGA CGGCTCTAGA GGGTCGCAAC
GACAAGAACT GGTCCACCAC GACCACACTG ACAGTGAACA AGATGTTCCA TGAGGGATTC
GATATCGACA GCTGTAAGGC GTGGGATGTG GCCGCGGCCG ACAGCATAGA GACCCAGGCC
GTCACCAGTA ATCTGCCGAT CCTGGTGATC AACGGTGGTA ACGATCATCA GACGCCACCG
GCATGGGGTG AGTTAGTGGT GAAGAACATG CCTAATGCCC AGCTGTTCAC CAACCCTCAG
GGTGGCCACG TACAGCTGAC CTCACAGAAC CCTTATCGCA ACTGTATTGA CGGCATCACC
ATGGCCTTCC TGGCGGCGCC AGATCAGAAG ATCAAGACCC AGTGCACCAG CATGATCCCG
GTATTTAAAT ACAACTAA
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| Protein sequence | MSLTHKPNLL AFGTLVMATA LLGGCNQSSK SDTKKEVTSK VGTYASVDCS TFTKSKDLPK
GASCGYLTVP EKHAIKGQSA SKKTMEIAVL KIPATKTEAK ADPVVYLQGG PGYSAIDSLE
DFTQSKAKYL WNDRDFYLVD QRGTGHAKPA YKCTEFNTVK GSIEQVKACK ARLKAKGVDF
SAYQSVQSAH DFIMLRKALK LDSWNLYGAS YGTRLAETII REDSQGVRSV ILDGVFPIEV
NGLSDTPWAT YATLDRIVAN CDASINCASE ILKPMIESII ERLQNQGEEQ AAIRFVNYIA
SLAGDARVVP LILAIDKDLN IIINEKDNEE AEGYFAPMAL SVVCAEEYAF LNQTALEGRN
DKNWSTTTTL TVNKMFHEGF DIDSCKAWDV AAADSIETQA VTSNLPILVI NGGNDHQTPP
AWGELVVKNM PNAQLFTNPQ GGHVQLTSQN PYRNCIDGIT MAFLAAPDQK IKTQCTSMIP
VFKYN
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