| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2127 |
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| Symbol | sdhA |
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| ID | 4908339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1971516 |
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| End bp | 1973264 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640125881 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001057008 |
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| Protein GI | 126460730 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGTTC TCAAATACGA TTTAGTGATT ATCGGCTCTG GCATTGCTGG GCTTAGGGCC
GCCACGGCGG CGGCTTGGGC AAGCGGCGGC AAGATCTCAA TAGCGATTCT CTCGAAGATA
CAGGCCATGA GGAGCCACAG CGGCTCTGCC GAGGGGGGCA TGTCGGCTGT GCTGTATCCA
GAGAAGACTG GGGACTCCCT GGAGCTACAT GCCTACGACA CTGTGAAGGG GAGCGACTTC
CTTGCCGACC AAGACGCGGT TCAGGTACTT GTGGAATATG CGCCTAGGGA GGTCCGATAC
TTGGAGAGAA TTGGAGTGCC TTGGACTAGG GAGCCCGATG GGAGAATTAG CCAAAGACCC
TTTGGCGGCA TGACTATACC GCGCACCACC TTCGCCGCGG ACAAGACGGG GTTCTTCATA
ATGTCTACCC TCTTTTCTGA GACTAGGAGG TTTGAAAACA TCCACGTGTA CCACGAGCAT
TTTGTCACAA AGTTGATCGT GGAAGGCGGC GAGTTTAAAG GCGTGACGGC GTACGACCTC
AAGAGCGGCG AGTTTAAACT CTTTTATGCG AAAGCCGGCA TCATAGCCAC TGGAGGTGCG
GGGAGGCTGT ACCGCTTTAC TACAACGGCT CACTCCACCA CGGGGGAGAC CCTGGGATAC
GCACTTAGGG AGGGCATTGC GATAAAGGAC ATGGAGTTTG TCCAATGGCA CCCCACGGCC
CTTGTCCCCA GCGGCATTTT GGTGAGCGAG GCGGCGAGGG GGGAGGGCGG CTACCTAATA
AATAAGGAGG GGGAACGGTT TATGAAGAGG TACGCCCCCC AGAGGATGGA GCTGGCCCCC
AGAGACATTG TGTCGAGGGC TATTTTGACC GAGTGCGCCG AGGGGAGGGG GTTCCAGCAC
GAGTCTGGCA TGTGCTACGT GGGCCTCGAC CTTAGGCATC TAGGCGAGGA GAAGATTAAT
AGCAGAATTC CATTCATCCG CGAGCTGGCG CATAAGTACG CTGGCGTAGA TGTATTGTCT
GAGCCTATCC CAGTTAGACC AGCCGTGCAC TACACCATGG GCGGCATTCA CACAGATACA
TGGGGCCGTG TCTTAACCGC GAACGGCGAG TGGATAAGGG GCTTGTGGGC TGCCGGCGAG
GCAGCGGCCG TCAGCGTACA TGGCGCAAAC CGGCTCGGCT CCAACTCGTT AAGCGAGTGC
TCCGTGTGGG GCAGGCTGAC GGGAGAGCAG GCGGCGAAAT ACGCCATGGA GAAGGCCCCA
CTGCCAGAGC CCGATGGAAA ACTACTAGAC ATAGCCAAGA AAGAGGAGGC ACGGGTCTTT
GACAAACTCA TCCACAGAGA GACTAACGCC CCCACTCCCT ACGAAATAAA GAGGCAGCTG
AACGACATAA TGGAGGAGCA CTTTGGCCCA TTTAGACACG GGTCGTCGAT GGCGGAGGGG
TTGGCAAAGC TGAAAAAACT CAGGGAAGCG GCCTCCTCCT TTAAGATTGT CGACGGCAGC
CGTGTGTACA ACCAGAACCT GAAAGACGCC CTTGAGGTAG ACGGCATGAT AGACCTTGCG
CTTGTCGTAG GTATTGGCGC ATATACGAGG ACAGAGTCTA GGGGGGCGCA CTATAGGCTA
GACTACCCCA AGAGAGACGA CGTGAATTGG CTCAAACACA CCGTTGCGTA TCTATACGGA
GGCGAAATAA AGCTCACATA TACGCCGGTA ACAATTACAA AATGGAAGCC AGAGGAGAGG
AAGTATTAG
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| Protein sequence | MEVLKYDLVI IGSGIAGLRA ATAAAWASGG KISIAILSKI QAMRSHSGSA EGGMSAVLYP
EKTGDSLELH AYDTVKGSDF LADQDAVQVL VEYAPREVRY LERIGVPWTR EPDGRISQRP
FGGMTIPRTT FAADKTGFFI MSTLFSETRR FENIHVYHEH FVTKLIVEGG EFKGVTAYDL
KSGEFKLFYA KAGIIATGGA GRLYRFTTTA HSTTGETLGY ALREGIAIKD MEFVQWHPTA
LVPSGILVSE AARGEGGYLI NKEGERFMKR YAPQRMELAP RDIVSRAILT ECAEGRGFQH
ESGMCYVGLD LRHLGEEKIN SRIPFIRELA HKYAGVDVLS EPIPVRPAVH YTMGGIHTDT
WGRVLTANGE WIRGLWAAGE AAAVSVHGAN RLGSNSLSEC SVWGRLTGEQ AAKYAMEKAP
LPEPDGKLLD IAKKEEARVF DKLIHRETNA PTPYEIKRQL NDIMEEHFGP FRHGSSMAEG
LAKLKKLREA ASSFKIVDGS RVYNQNLKDA LEVDGMIDLA LVVGIGAYTR TESRGAHYRL
DYPKRDDVNW LKHTVAYLYG GEIKLTYTPV TITKWKPEER KY
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