| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_29232 |
|---|
| Symbol | |
|---|
| ID | 4851960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 3304415 |
|---|
| End bp | 3305122 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 640393668 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001387201 |
|---|
| Protein GI | 126276146 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.39353 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCCA TTCCACAAAA CAGCTCAACA GAGGTATCAC TATTGCATCC GAAAGTATTG
CTTCTTTCCG CTGGAATTAC GACCACTGCG TTTTTGTCCT ACAAATTTCA CCAGAGGTAT
GTTACTAGAT TAAGAACCTA TTTGGACATA ACACCCAAAA TATTGGACAA CCAGCAGAAA
TTGTACGGGT ATGTTACACG AGTAGGTGAT GGAGATAACT TCCGCTTTTT CCATACTCCT
GGTGGAGTTT TCATGGGTTG GGGCTGGCTT CGTAAAATTC CTACCAATAG AAACCAGTTG
AAAGACGAGA CGTTAATGAT TAGATTATGT GGAGTAGATG CTCCAGAACG TTCCCATTGG
GGCAAACCAG CACAGCCATT TTCAGAAGAA GCACTCATTT GGTTGTCCTC GTATGTTGGA
AAAAGATACG TGACGGTGAC CCCATTCTCT ATTGACCAGT ACAAGCGATT AGTGGCACGA
GCTCAGGTAT GGAAATGGAC TGGCAAAAAA GATGTTAGTG CAGAAATGAT TAGACAGGGC
CTAGGAATAG TATACGAAGG AAAACTGGGA GCAGAGTTCG GCGATAATGA AGCATTATAT
AGAAACTTGG AAGCCAAGGC CAAGAGACAG AAGAAAGGAG TATGGTCTTT GGGAAAGAAG
ATGACGACTC CAGGCGAGTT CAAAAGAGAA CACTACAGAG GAGACTAG
|
|---|
| Protein sequence | MAPIPQNSST EVSLLHPKVL LLSAGITTTA FLSYKFHQRY VTRLRTYLDI TPKILDNQQK
LYGYVTRVGD GDNFRFFHTP GGVFMGWGWL RKIPTNRNQL KDETLMIRLC GVDAPERSHW
GKPAQPFSEE ALIWLSSYVG KRYVTVTPFS IDQYKRLVAR AQVWKWTGKK DVSAEMIRQG
LGIVYEGKLG AEFGDNEALY RNLEAKAKRQ KKGVWSLGKK MTTPGEFKRE HYRGD
|
|---|
| |