| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0146 |
|---|
| Symbol | |
|---|
| ID | 4808704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 185048 |
|---|
| End bp | 187321 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640105557 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_001036580 |
|---|
| Protein GI | 125972670 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.234188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATA GAAAAGAAAG AATACTGGCG TTTATGAGGG AGGATGCATA CAAACCTCTT
TTATTCAGTG AATTGGTTAC TGTACTGGAC GTCCCAAAAA GCGACATCGG GTTGTTTGAA
AACCTGCTAA AGGAGCTGGA GGAAGAAGGG CTCATATTTA AGAACCGAAA AAACAGGTAT
GGAGTTCCTG AAAGAATGAA TCTTGTATGC GGATACCTCC AGGGAAATGA GCATGGTTAT
GGATTTTTAA TTCCCGATGA CGAAAACATG AAGGATATAT TCATTCCTTC CGGCGGTCTG
AACGGCGCCA TGCACAAAGA CAGGGTTATA GCAAGGATCA ATAAAAAAGG TATCGGAGAC
AAAAGAGCCG AGGGTGAAAT AATAAAGATT GTAAAAAGGG CCAACAAGAC CGTTGTCGGC
ACGTTTGAAA GCAGCAAGTA TTTTGGATTT GTAGTACCGG ATGACCCGAG AATATCCGGG
GACATTTTTA TTCCGAAGGA CGAGATAAAT GGTGCAAAAT CAGGTCAGAA AGTTGTGGCC
GAAATTGTTG TATGGCCGGA AAAAAGAAGA AATGCCGAGG GAAGGATAAT TGAAATAATT
GGTGACAAAG ATGAGCCGGG TTCGGACATT CTCTCTATTA TAAAAGCTTA CAACTTAAGA
GAGGACTTCC CTGAGGAGGT AATAAGAGAG GCAAAATCAA TCAGCCAGAC CGTAACCGAG
GATATGATAA AGGGAAGGCG CGACCTTAGG GATTTGACCA TGGTCACCAT TGACGGCGAA
GATGCCAAGG ACCTGGATGA TGCCGTTTCC ATTGAAAGGC TTCCTAACGG AAACTACCGT
TTGGGGGTTC ATATTGCCGA TGTAAGCTAC TATGTCAAAG AGGGCTCCCC TTTGGATAAA
GAGGCTTTGA AAAGGGGTAC CAGTGTTTAT CTGGTGGACA GGGTTATTCC CATGTTTCCA
AAAGAACTTT CAAACGGTAT TTGCAGCCTT AATCCCAAAG TTGACAGGCT TGCTTTCACC
GTCATGATGG AGATTGACAA ATCCGGCAGG GTTGTGGATC ATGAAATATT TGAAAGCGTA
ATAAATGTTA ATGAGAGAAT GACTTATACC GACGTTTACA AGATTCTCGA GGAGAACGAC
GAAGGGCTTA TTGAGCGCTA CAAATACCTC TGCGACACCT TCCACACAAT GAAGGAACTG
GCTCTTATAT TAAGAAAAAA GAGGATGGAC AGAGGAGCCA TTGATTTTAA TTTTGACGAG
GCGAAAATAG TGCTTGACGA AAAAGGTGTG CCGATTGAGG TTAAAAGATA TGAGATGACC
ATTGCCAACA ATATAATTGA AGAATTTATG CTGGTGTGCA ATGAGACGGT CGCAGAACAC
TTTTTCTGGA CAAACACACC TTTTGTTTAC AGAATCCATG AAGATCCCGA TCCGGATAAA
ATTGAGGCCT TCAGTGAGTT TGTACACAAC CTGGGATATA CGCTCAAAGG TATAAACAAA
ATTCATCCCA AGGCTTTGCA GGATGTTCTG GAGAAGGCCA GAGGCACAAA AGAGGAGACC
ATAATAAGCA CGGTTATGCT GAGGTCTTTG CAAAAGGCCA GGTACAGCCA CATCAACAGC
GGACATTTTG GACTTGCCGC GAAATACTAC TGCCACTTTA CATCACCTAT CAGAAGATAT
CCGGACCTTA TTATTCACAG AATTATGAAG GAATATCTGA AAGGTACTGT AAATCCGGAA
AGAGAAGATT TATTAAACAG CAGACTTCCT GAAATTGCAA AGCTTTGTTC TGAAAGGGAA
CGGGCTGCGG AAGAGGCCGA AAGGGAGACC GAAGAGCTGA AGAAAGTTGA GTTTATGAAA
AAGCATGAAG GACAAGTGTT TGAAGGTATA ATATCAAATG TGACGTCCTT CGGCATGTTT
GTGGAATTGG AAAACACTAT TGAGGGCCTG GTAAGGATAA GCAGCCTGGA GGATGACTAT
TATGTGTATA ATGACAAAAG TTACAGCCTG ATAGGTGAAA GAAGCAGAAA GGTTTATCGG
ATAGGCGATG TGGTAAATGT CATGTTGATT AAAGCTGATG TGGCCGCCCG CAGGATTGAA
TTTACCATTG TTGACAAAAA CAATGGTGAA AATGATGAGA AGGCTTTAGA GTCAGATGGA
AAGGAGAATG GCAAACCTAA AAGAAAGCGC AGGAGAAAAA CACCTGATGA AGCCGTGCTT
CTTCATGTGC AGGGTAAAAA GAAAAAGAAG AAAACTAAAA AAGCTAAAGT ATAA
|
|---|
| Protein sequence | MMDRKERILA FMREDAYKPL LFSELVTVLD VPKSDIGLFE NLLKELEEEG LIFKNRKNRY
GVPERMNLVC GYLQGNEHGY GFLIPDDENM KDIFIPSGGL NGAMHKDRVI ARINKKGIGD
KRAEGEIIKI VKRANKTVVG TFESSKYFGF VVPDDPRISG DIFIPKDEIN GAKSGQKVVA
EIVVWPEKRR NAEGRIIEII GDKDEPGSDI LSIIKAYNLR EDFPEEVIRE AKSISQTVTE
DMIKGRRDLR DLTMVTIDGE DAKDLDDAVS IERLPNGNYR LGVHIADVSY YVKEGSPLDK
EALKRGTSVY LVDRVIPMFP KELSNGICSL NPKVDRLAFT VMMEIDKSGR VVDHEIFESV
INVNERMTYT DVYKILEEND EGLIERYKYL CDTFHTMKEL ALILRKKRMD RGAIDFNFDE
AKIVLDEKGV PIEVKRYEMT IANNIIEEFM LVCNETVAEH FFWTNTPFVY RIHEDPDPDK
IEAFSEFVHN LGYTLKGINK IHPKALQDVL EKARGTKEET IISTVMLRSL QKARYSHINS
GHFGLAAKYY CHFTSPIRRY PDLIIHRIMK EYLKGTVNPE REDLLNSRLP EIAKLCSERE
RAAEEAERET EELKKVEFMK KHEGQVFEGI ISNVTSFGMF VELENTIEGL VRISSLEDDY
YVYNDKSYSL IGERSRKVYR IGDVVNVMLI KADVAARRIE FTIVDKNNGE NDEKALESDG
KENGKPKRKR RRKTPDEAVL LHVQGKKKKK KTKKAKV
|
|---|
| |