Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_B0536 |
Symbol | |
ID | 4787379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008826 |
Strand | + |
Start bp | 485151 |
End bp | 487130 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640092963 |
Product | CdaR family transcriptional regulator |
Protein accession | YP_001023541 |
Protein GI | 124263071 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3835] Sugar diacid utilization regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.289228 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00416894 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCTGCCGG GTATCGGCAC CTTCGTGCCG GTGAAGCCGG GGATGGGCGT CCTGGCGGAT TGCCAGCTCG TCGACGCAGA CCGCGCCCAG GTGCTGCGCT GTCTTGCGAT CGGCTTCGAA CTCGCGCTCA CCGCAGCGAA CCAGTATCGC GTCACGAGGG ACGCGATGGA CGAGATCGAT AGCCTGCAGC AGGTCGCCAG GCGCATTCTG TCCGCATCCG AACTGGACGA GGTGCTGTTC TCGATCTCGC GCGAGACGGC CCGGCTCCTT GGCGCGGACA TCGGCGGGGT GTTTCTTCGA GACGGCGACG AGCTCGTGAT GCGCAGTTGC GTCGGCAACG ACACGCTGGA CATCGATCGG CTCAGGATGA AGCGTGGACA GGGCCTTGCA GGGCGCGTTC TAGAGACCGG GCGCCCGTGC AAGGTCGACG ACTACCTCGC CAGCGATCAG GTCAGCCGCG ACTACTTCTG GCTCGTTCGC GACGAGCAAA TCCGCTGCGC GGTGGGCGCG CCGCTGCTTG CGCGAGAAGG CGTGATCGGC GTGCTCGAGG TTTGGCGCCG ACGCGACGTG CCGTTCACCG ATCAGGACGA GAAGCGCGTC GCCGCGCTCG CCAATCTGAC GGCGATCGCG GTCCAGAATG CCCGGCTGTA CGAAAGCCAG AAGGCTTCAG TGCAGCAGCT CATACAGACC AACGAGAGTC TGCGCCAGCA GCACGAGGTC GTGCGTGTGT CGGCACAACT CCAGGACGAC GTCATCGGCG CCCTACTGGA CGGCGGCGGC GTCACGGCGA TCGCGCGGAT CGTCGCCCGC CATGCCGGTG TGGAGGTCGC GATCCTGGGG ACCGATCTCG GGGTAATGGC TGCCTATCCG GCGCAGGTCT CGAACGGCGA CTGGCTCGAG CGGGTGGAGA CCGCCGTGCG GCAGTTCCCC GGGTACGCCA ACAACACCAG CGTGACCTCC CGAGAGCGCG ATGGCTGGCT CTCGCTGCGT CCGATCGTTG CTGGCGGGGA CCGGATTGGC TGGGTATGCA TGCGCTCGAA CAGTGAGCCG GCCGAGATGC AAGAAGCCGC GAGCCGTCAA GGAGCGGTCG CTAGCGCGCT GTATTGCCTT GAGCAGCGTG CTGCAAGCGT CGCCCGGGCC TCCGCGCTCG GCGCGCTGAT GTGGGACTTG CTGGAGGGCA CGCCGCCGGT CAGGCAATCC GCGCTCGAGC GCTTGACGGA GTTCCACATC GACCTGCGGG GCCCGCACCG CGTCGTCCAT TGCACTATAG AGGGCCTGGC CGAGACGGCG CGCGGCGAGG GTTGGAACAT GGACACGGTG CAGCGCAAGC AGCGCGACGT GCGAGATGCG ATCGAGCGAG CGCTGAGCGC TGCGGGACTG AAGTTGGCGT CCTCCCGTGG CGATCTGATC GTGGCGATCA TCCCAGCGCT GGACGCCGCG CAGGTGACGC GGCAGCTCAA GTCGCTGAAC GAGGAGATCC TGGCGAGGGA CAAGGTCAGA ACGTTCTGGG GCGTCAGCGC TCCATTCGAT TCGCCGTCGC AGCTGTCGAA CGCCAACCAG GAGGCCAAGT GTGCCGCGCT GGCCGTTGGG AAGCTGGGCA CGGCGCAGAG CCCGGTGGTA ATTCACGAGC ATCTGGGCGT GCTGACGTTG TTATTGAATG GTGGCGGTAT TGCCGAGGGG CACGACCTTC GCAAGTACGT CGACCGCATG CTGGGCCCGA TGCTCAAGTA CGACTCCGCG CACCATGGCG TCCTGGCGAA GACGATCCGG TCCTATCTGG ACAACGATTG TTCACTGAAG CTGACGGCGC TGCAGCTTTT CGTCCACGAG AAGACCGTCC GCTACCGTCT CGCCCAGTTC GAGGAGCTGA CGGGCGTCGA CTTGCGCCGC CACCGCGAAC GGATGTCGGT CGACCTAGCG TTGCTGATGC ACGACTTCGC GACCCGGTCG GCCGGCGTAG CAGGCAAAGG GGCGGGCTGA
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Protein sequence | MLPGIGTFVP VKPGMGVLAD CQLVDADRAQ VLRCLAIGFE LALTAANQYR VTRDAMDEID SLQQVARRIL SASELDEVLF SISRETARLL GADIGGVFLR DGDELVMRSC VGNDTLDIDR LRMKRGQGLA GRVLETGRPC KVDDYLASDQ VSRDYFWLVR DEQIRCAVGA PLLAREGVIG VLEVWRRRDV PFTDQDEKRV AALANLTAIA VQNARLYESQ KASVQQLIQT NESLRQQHEV VRVSAQLQDD VIGALLDGGG VTAIARIVAR HAGVEVAILG TDLGVMAAYP AQVSNGDWLE RVETAVRQFP GYANNTSVTS RERDGWLSLR PIVAGGDRIG WVCMRSNSEP AEMQEAASRQ GAVASALYCL EQRAASVARA SALGALMWDL LEGTPPVRQS ALERLTEFHI DLRGPHRVVH CTIEGLAETA RGEGWNMDTV QRKQRDVRDA IERALSAAGL KLASSRGDLI VAIIPALDAA QVTRQLKSLN EEILARDKVR TFWGVSAPFD SPSQLSNANQ EAKCAALAVG KLGTAQSPVV IHEHLGVLTL LLNGGGIAEG HDLRKYVDRM LGPMLKYDSA HHGVLAKTIR SYLDNDCSLK LTALQLFVHE KTVRYRLAQF EELTGVDLRR HRERMSVDLA LLMHDFATRS AGVAGKGAG
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