Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A2003 |
Symbol | |
ID | 4783790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | - |
Start bp | 2146031 |
End bp | 2147035 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 640090573 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_001021196 |
Protein GI | 124267192 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.704766 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.26865 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCCACCG AGCCGGCCGA GGCCGACGAG CCCGCCGAAC CGCTGGCGGG CGATGCCGAG CAACGCCAGG CGCGGGTCGA TGCCGGCGCC CACGGCGAGC GTCTCGATCG CTGGCTGGCG ACGCTGGCGG GCGAGTTCTC CCGCAACCAC CTGCAGACGC TGATCGAGGG CGGGCAGGTC CGCATCGACG GGCAGACCGT CACCGCCCGC GCACGGCGCG TCAGTGCGGG CCAGCAGATC GAGATCACGC TGCTGCCCAC GCCGGAGAGC CAGGCCTTCC GGCCCGAGCC GGTGGCGCTG CCGGTGGTGT TCGAGGACGC CCATCTGCTG GTCATCGACA AGCCGGCCGG TCTGGTGGTG CACCCGGCGC CCGGCAATTG GTCGGGCACC GTGCTCAACG GCCTGCTGGC GCATCACGCC GGCGCGGCGG CGCTGCCGCG GGCCGGCATC GTGCACCGGC TCGACAAGGA CACCAGCGGC CTGATGGTGG TGGCCAAGAC GCTGCCGGCC ATGACGTCAC TGGTGCGTGC GATCGCCGCG CGGGAGGTGC ATCGCGAGTA CCTGGCCCTG GTGCACGGTG TGCTGCGCCA GGCGGTCTTC AGCGTCGACG CGCCGATCGG TCGCGATCCG GTGTCGCGCA TCAAGATGGC CGTGCTGGCG GGCGGCCGGA CGGCGCGCAC CGATGTCGAG TTGATCGCGG CGCGCGACGC CGTCAGCGCG GTGCGCTGCA CGCTCCACAC CGGCCGCACG CACCAGATCC GGGTGCACAT GGCCTCGAGA GGACATGCCC TGTTGGCCGA CGCGCTGTAC GGTGGCCGAC CCGGACTCGG CCTGACGCGA CAGGCGCTGC ATGCGCACCG GCTGGGCTTC GTCCATCCGG CGAGCCTGCA GCCAATCGAG TTCAGCGCCG TCCCGCCCGA CGACCTGCGC GCGGCCTGGC AGCAGATCGT GGGCGGGTCG CACGCGCCCG GCCACGATAC AGATACAATC GTCGTGCAGG GCTGA
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Protein sequence | MATEPAEADE PAEPLAGDAE QRQARVDAGA HGERLDRWLA TLAGEFSRNH LQTLIEGGQV RIDGQTVTAR ARRVSAGQQI EITLLPTPES QAFRPEPVAL PVVFEDAHLL VIDKPAGLVV HPAPGNWSGT VLNGLLAHHA GAAALPRAGI VHRLDKDTSG LMVVAKTLPA MTSLVRAIAA REVHREYLAL VHGVLRQAVF SVDAPIGRDP VSRIKMAVLA GGRTARTDVE LIAARDAVSA VRCTLHTGRT HQIRVHMASR GHALLADALY GGRPGLGLTR QALHAHRLGF VHPASLQPIE FSAVPPDDLR AAWQQIVGGS HAPGHDTDTI VVQG
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