Gene P9515_18181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagP9515_18181 
Symbol 
ID4719987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9515 
KingdomBacteria 
Replicon accessionNC_008817 
Strand- 
Start bp1601446 
End bp1602447 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content36% 
IMG OID640081517 
Producttype II alternative sigma-70 family RNA polymerase sigma factor 
Protein accessionYP_001012132 
Protein GI123967051 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATCCG AAACATTAGT TGAGAATAAA TTAGCTAATA TATCTTCTCT CAAATCTAGC 
AACGATGTAG ATTTGGTAAG GTCATATTTG AGAGATATTG GAAGAGTTCC ACTACTATCA 
CATGAGCAAG AAATAACTCT AGGGAGACAA GTTCAAGAAT ACATGCAAGT TGAGAGGGCT 
GAGCTTGAAA TCATAGAATT GACAGATAAT AAACCCTCAG TTGAAGAATT AGCCGCAAAA 
TTAAATTTAT CTTCATCACA AATTAAAAAA AGACTCAGAG CTGGTCAACG TGCGAAAGAA 
AGAATGGTTG CTGCAAATCT AAGACTTGTT GTTAGTGTTG CCAAAAAATA TACTAAGAGA 
AATATGGAAC TACTTGATTT AATTCAAGAA GGAACAATTG GATTGGTAAG GGGGGTAGAA 
AAATTCGATC CTGCAAGAGG ATATAAATTT TCAACTTATG CCTATTGGTG GATTAGGCAA 
GGAATTACTA GAGCAATTGC GGAAAAAAGT AGAGCTATTA GATTACCTAT TCATATCACC 
GAAATGCTTA ATAAGTTAAA AAAAGGGCAA CGAGAATTGA GTCAAGAAAT GTCAAGAACG 
CCTACAATTA GCGAACTTGC GAAATATGTT GAATTACCTG AAGATGATGT TAAGGATTTA 
ATGTGCAAAG CGGGCCAGCC AGTGAGTCTC GAAACTAAGG TTGGTGATGG CGAAGATACA 
GTATTACTAG ATTTACTAGC TGGAGGAGAG GATTTGCCTG ACGAACAAAT TGAGATGGAT 
TGTATGAGAG GTGATCTTCA TTCTCTACTT CATCAGCTGC CTGATCTTCA ATGTAGAGTT 
TTAAGAATGA GATATGGAAT GGATGGAGAT GAACCAATGT CTCTAACTGG TATTGGACGT 
GTTTTAGGTA TCAGTAGAGA TAGAGTAAGA AATTTAGAAA GAGATGGTTT GAGAGGTTTA 
CGTAGACTCA GTGAGAATGT TGAAGCCTAT TTCGTTTCTT GA
 
Protein sequence
MSSETLVENK LANISSLKSS NDVDLVRSYL RDIGRVPLLS HEQEITLGRQ VQEYMQVERA 
ELEIIELTDN KPSVEELAAK LNLSSSQIKK RLRAGQRAKE RMVAANLRLV VSVAKKYTKR 
NMELLDLIQE GTIGLVRGVE KFDPARGYKF STYAYWWIRQ GITRAIAEKS RAIRLPIHIT 
EMLNKLKKGQ RELSQEMSRT PTISELAKYV ELPEDDVKDL MCKAGQPVSL ETKVGDGEDT 
VLLDLLAGGE DLPDEQIEMD CMRGDLHSLL HQLPDLQCRV LRMRYGMDGD EPMSLTGIGR 
VLGISRDRVR NLERDGLRGL RRLSENVEAY FVS