| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1640 |
|---|
| Symbol | |
|---|
| ID | 4709636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1790579 |
|---|
| End bp | 1791838 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639856105 |
|---|
| Product | coenzyme F420 hydrogenase/dehydrogenase beta subunit |
|---|
| Protein accession | YP_001003206 |
|---|
| Protein GI | 121998419 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1035] Coenzyme F420-reducing hydrogenase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.326327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCAG CCACCGTGCA GACACCGTCC CTGGCCACCC CGGCCCCGCG GGATCTTTGC
ACCGATTGCG GGCTCTCGCG CAGCTCCGAC CCGAAGCGCT GCGGCCGCGC CTGCCAGTTC
ATCCGTCCAG ACTATGCCGC GCTGGAGCGC CGCACCCACG GGCGTAGCCG GGACCCCGAA
CGCCCCGACG AGCTCCACTT TGGCCCCTTC CGGCGCATGC ACCAAGCCGC CCTGCGAACG
CCGCGGGCCG GCGCACAGTG GACCGGCATC ACCACTCGGT TGGCCGAGCG GTTGCTGGAG
AGCGGGCGCG TCGACGCGGT CCTGACCGTC ACCGGCGCTA GCGAAGACCC CTGGCACCCT
CAGCCCGTGC TCGTCACCGA CCCGGCAAAG CTCTCTCAGT GCCGCGGCAT GCGCATGGGC
TACGCCCCCT TGCTCGCCCT GCTTGAACCG GCATTGGCAC AAGGCTACAA GCGGCTTGGG
GTGATCGCCT TGCCATGCCA AACGTACCCG CTTCGCGCCT TGGAGGAGGA GCTCGGTCTG
GAGCGCCTGG AGATCATCGG GACACCCTGC TCGGACAACA CCCCCACGGC ACACTTCCAC
CGGTTCCTCG AGTTGCTCAC CCCTTCGCCC GAAGCGGTCA CCTACCTGGA GTTTCGCGCC
GACTACTACG TCGAGCTGCG CTTCCAGGAC GGCAGCAAGC GCGAGATCCC CTTCCTTCAA
CTACCGATCT CCCGGCTGCC GGCCGACTTC TGGCCACTGA CCTGCCGGAC CTGCGTCGAC
TACACGAACG CGCTGGCGGA TATCACGGTC GGCTACATGG CTGGGCGGGG CGAGCAGTGG
ATCCTCGTTC GCAATGAACG CGGCGAGGCG ATGCTGGAGT TGCTCGGCGA CGAGGTGCGG
CTGGGTGCAC CCAGCTCAGG AGGCAGGCGC GACGGCCCGG TCCAGGGGTT CATCGACAAT
ACTGAGCGCG CGGCCGGGGG GATGCCCAGT CGGGGCATGC CGAACTGGCT GCGCCCGATC
ATCGGCCGGC TCATGCCCTT CGTCGGCCCG CGGGGGCTGG AGCTGGCGCG CGCACGCCTG
GAAATGAAGG CCGCCGAAAC CCTCATCCAC CTCCAGCACC AAGCCCCGCG CCGTGCCCGG
GCGATGGTCC CCGAGCATGT CTACAGGCTG GTGGAGGGCT ACCGAATCCC CAGCGTGGAA
CGCTCCGAAC CCCGGCACGA CGGGGCCCGG AGCGCGACGC CGTCAAACCG GGTCGATTAG
|
|---|
| Protein sequence | MDSATVQTPS LATPAPRDLC TDCGLSRSSD PKRCGRACQF IRPDYAALER RTHGRSRDPE
RPDELHFGPF RRMHQAALRT PRAGAQWTGI TTRLAERLLE SGRVDAVLTV TGASEDPWHP
QPVLVTDPAK LSQCRGMRMG YAPLLALLEP ALAQGYKRLG VIALPCQTYP LRALEEELGL
ERLEIIGTPC SDNTPTAHFH RFLELLTPSP EAVTYLEFRA DYYVELRFQD GSKREIPFLQ
LPISRLPADF WPLTCRTCVD YTNALADITV GYMAGRGEQW ILVRNERGEA MLELLGDEVR
LGAPSSGGRR DGPVQGFIDN TERAAGGMPS RGMPNWLRPI IGRLMPFVGP RGLELARARL
EMKAAETLIH LQHQAPRRAR AMVPEHVYRL VEGYRIPSVE RSEPRHDGAR SATPSNRVD
|
|---|
| |