| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1427 |
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| Symbol | |
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| ID | 4710325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1540818 |
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| End bp | 1541828 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639855894 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001002996 |
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| Protein GI | 121998209 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.818946 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTCG ATACGGCGGT TGTCAGCGTG CACGCGTACG CTGATGTGGA CGCAGAGCGC
GATCCCCCGA TGATCGATGA CCCCGGCGAG CTGATCCAGC CCTACGGCAT CGATGAGGGC
AGCGAGCCCG AGCCGGCTCG CCGGCCCCGT AGGAGCCGAT CCAGCACGGA GTGTCGCACC
GCGCTGGACG CCACGCAGCT CTACCTGAAT GAGATCGGCC ACGCCTCCCT GCTCACGGCC
GAGGAGGAGG TCGCGCTGGC GAGACGCGTT CAGCAGGGCG ATGCGGCAGC CCGGGCGCGC
ATGATCGAGA GCAACCTCCG GCTGGTGGTC AAGATCGCCC GGCGCTACAT GAACCGCGGC
CTCGCCTTCC TGGACCTCAT CGAAGAGGGC AACCTGGGGT TGATCCGCGC CGTGGAGAAG
TTTGATCCCG AGCGCGGGTT CCGTTTCTCG ACCTATGCGA CCTGGTGGAT CCGGCAGACC
ATCGAGCGCG GCATCATGAA TCAGACACGC ACCATCCGGC TGCCGATCCA CGTCATCAAA
GAGATCAACC AGTACCTGCG GACCCAGCGC CGCCTGACCC AGACACTGGA TCACGAACCC
ACGGTCGATG AGATCGCCGA TGCTATGGGG CGTTCGCCGG AAGACGTCCG ACGCATGCGC
GGTCTCAACG AGGGGACCAC CTCGGTGGAT GTGCCGATCG GCAAGGATTC CGACCGGGTG
CTACTCGACG CCATTCCCGA CGAGACGCAG GGCATGCCGG AGAATGTCCT CGAGGACGAC
GACGTCGTGC GGCATCTGCA AGACTGGCTC GGCTTCCTCA CTGACAAGCA GCGGGCCGTG
CTGGAGCGGC GTTTCGGGCT CAACGGCCAC GAGCGCTACA CGCTCGAGCA GGTGGGCACG
CAGGTGGGGG TGACCCGCGA GCGGGTACGA CAGATCCAGA TCGATGCACT GCGGCGGCTG
CGCGAGCTCA TGGAGCGCGA TGGCTACTCC CAGGAGGCGG TCTTCGGCTA G
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| Protein sequence | MTLDTAVVSV HAYADVDAER DPPMIDDPGE LIQPYGIDEG SEPEPARRPR RSRSSTECRT
ALDATQLYLN EIGHASLLTA EEEVALARRV QQGDAAARAR MIESNLRLVV KIARRYMNRG
LAFLDLIEEG NLGLIRAVEK FDPERGFRFS TYATWWIRQT IERGIMNQTR TIRLPIHVIK
EINQYLRTQR RLTQTLDHEP TVDEIADAMG RSPEDVRRMR GLNEGTTSVD VPIGKDSDRV
LLDAIPDETQ GMPENVLEDD DVVRHLQDWL GFLTDKQRAV LERRFGLNGH ERYTLEQVGT
QVGVTRERVR QIQIDALRRL RELMERDGYS QEAVFG
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