Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_4266 |
Symbol | |
ID | 4670475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008766 |
Strand | - |
Start bp | 15120 |
End bp | 15884 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639826938 |
Product | conjugal transfer protein TrbJ |
Protein accession | YP_974100 |
Protein GI | 121582571 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 0.44227 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00186593 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAGCAGA AGTTTTTAGC CGCTAAATTG GCCCTCGTCG TCGCTGTTTC GAGCACGTTG ATGGTCACGC CTGTGGAGGC TGGTATCCCC GTCATCGACG GCACCAACCT GTCGCAGAAC ATCATGACGG CTATCGAATC GGTGGCCCAA ACGCTCAAGC AAATTGAGCA GTACAGCACC CAGCTCCAGC AGTATCAAAA CCAGCTCCAG AACACGATGG CCCCGGCCGC GTATATCTGG GATCAGGCGC AATCGACCAT CAACGGGTTG ATGAATGCGA CCAACACGCT GAACTACTAC AAGAACCAGC TCGGCAGCCT GGACAGCTAC ATCGGCAAGT TCCAGGACGT GAACTACTAC AAGGGGTCGC CGTGCTTCTC GGCTACCGGC TGCTCGGCCG CCGAGTGGAC GGCCATGAAG AACGTGCAGC AGCTCGCCAG CGAGTCGCAG AAGAAGGCCA ACGATGCCTT GTTCAAGGGC CTCGACAAGC AGCAAGACAA CCTGACCGCC GACGCGGCGA CGTTGCAGCG GCTCCAGTCC TCGGCGCAGG GCGCAACCGG GCAGATGCAG GCCATCGGCT ACGCCAACCA GCTCGCCAGC CAGCAGGCCA ACCAGCTCTT GCAGATTCGC GGCCTGTTGA TCGCGCAGCA GAACGCGGTG GCAACCAAGA TGCAGGCCGA CGCCGACAAG GAAGCCCAGC AGGCGGCAGC GGCCGCACAA CTGCGCCAGG GCAGCTACCG GGCCAGCCCG GCGCGCACCT GGTAA
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Protein sequence | MKQKFLAAKL ALVVAVSSTL MVTPVEAGIP VIDGTNLSQN IMTAIESVAQ TLKQIEQYST QLQQYQNQLQ NTMAPAAYIW DQAQSTINGL MNATNTLNYY KNQLGSLDSY IGKFQDVNYY KGSPCFSATG CSAAEWTAMK NVQQLASESQ KKANDALFKG LDKQQDNLTA DAATLQRLQS SAQGATGQMQ AIGYANQLAS QQANQLLQIR GLLIAQQNAV ATKMQADADK EAQQAAAAAQ LRQGSYRASP ARTW
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