| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4473 |
|---|
| Symbol | |
|---|
| ID | 4685623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008758 |
|---|
| Strand | - |
|---|
| Start bp | 36177 |
|---|
| End bp | 38006 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639826326 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_973491 |
|---|
| Protein GI | 121583050 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00130209 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 4.4515899999999994e-20 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGA CCCCCTCCTC TACCGCCCCT GCGCAAGCAA AGACTGCTCG TTTTGTGCGC
CGCCTGGGCC CGCACCACTT TGCTTACCTG CGCGCCGTCA GTGAAGGGTT GGACTTGGGC
GAATGCGCCC GGCGCTACCT CGGCATCGAA CACGGCCATG AAGCCAAGAC GGCGCACCAC
GAAGCCGTTG ACGCAGTGCG CGCCGTGGCC AGGCGCCAGG GCGACGGCGC CTGGCGCCTG
GTGGGTCTGC GGATCCAGAG TCCTGTAGGC ATGCCGCAAC CATCGCTGGA GGCGTTCGCG
CAGCAGCACG GCTTGGACGG CTTCTCTGAA AGCGAGGTGC TCAAGCTCTA CACCGAAGCC
TTTCCGCTGG AGCGCAAAAC CGCTCGCGGC CAGCGCCTTC GTGAGCGTCA GCTGGCTCTC
CTGCGCCGCT TGGAGCGCCT GGCCGCCGAG ACCCCGCAGT CTATTGACCT CGTGGCGGGC
TGGTTTGACG AGGCTTTGGC GGTCAAGCTC GTCACGGCCG GCCTGCTCAC GCTGGGGATG
CTGAACGCCC GAATTTCGGC GGGCGGGCGC TGGTTTTCCA CCCTGCCAGC AGTCGGCATC
GCCAAGGCGA GGCGCATCGA GCGCCACCTG GCCACGCTCT TGCCGCGCGA GGTGCAACCA
CCCAAACCGC TTTTTGCGCT CTCGGCGACG CCTGCGCTGT GGGGGACGTC CTCGCTTTCC
CGCGCTTCTG ACGAGCAAAT GGATGCGACA TCAGGCGACC TTGTGGTGGC GAACGTGACG
AATGCAGCTT TGCTGCGCCC GCTGCTGGAC GTGGACTCGG ACCTGCAGGC GGTGCAAAGC
TGGATCCAGG CCCGCGCCGG CTCGCTGGCT ACGGCGACGC TCTACCAGCG CGAGGCACAC
CGCCTCTTGC TATGGCTGCA ATACGAATGC AGGGGGGCGA CACTGACCCA GATGACGGTC
GCCGACTGCG GCGCGTTCAT GGTGTTTTTG CAGCACATCC CGCTGCGCTG GATCTCGCGC
GCTCGCGCTG CCCCCGGCCA GAGCGGCTGG GCACCGTTTC GTGGCCAGCT CTCGCACGCG
AGTTGTCGCC AGACCATCGT CATCATCGCC TCGATGTTCG CCTGGCTTCA ATCCGCGCTG
TATCTCTCTA GCAATCCCTG GGTACTGGTC AACCAGTCCA CGGGCGATGA CCCGGGCAAG
AAGATGCTGG ACACCAAGGC GCTGAGCGAG GCGGCGATGC TTGAGGTGCT GCGCTTCATC
GACGCCCAGG CGCCCTCTCC TTCGCGCGCC CGGATCCGTT TTATCTTGCT GTTTGTCGAG
GCGGTCGGGC TGCGCTCGGC AGAACTTCTT TCAGCCACCC TCGGGGATCT GAGGATGGAG
CCCGAAGGGT GGGTGATGCA GGTGCATGGC AAGGGGTCGA AAAACAGGAT CGCGGCCGTT
CCAGGGCAGG CGCTGCATGC GCTCCAAGAC TATCTGCTAG TCCGCGGCCT GGGCTCGATC
CAGGCGGCGC CGCCCACCGC GCGCCTGCTG GCCAGCGCCG TGGACCCGAT GGCGCCAGTG
GGTTACCAGG CGCTCTACGA GCATGTCAGG GGATGGCTCG CCAAAGCGGT GCGGGCCTCC
AGCCTGCCCG CTAATGAGCG GGAGCGGCTG GCCGGAGCGA CAACGCACTG GCTGCGCCAT
ACCTTTGGCA CCCGGGCCAT CGCTCGGGAG GTGCCCTTAG ATGTGATCCA GGCGCAGATG
GGGCATGCGA GTATTCAGAC CACCACGGCT ATCTATGGCC GGGCGCCGAT CAAGCGACGG
GTGGATGAGC TGGGCAAGGC GTTCGGGTAA
|
|---|
| Protein sequence | MTETPSSTAP AQAKTARFVR RLGPHHFAYL RAVSEGLDLG ECARRYLGIE HGHEAKTAHH
EAVDAVRAVA RRQGDGAWRL VGLRIQSPVG MPQPSLEAFA QQHGLDGFSE SEVLKLYTEA
FPLERKTARG QRLRERQLAL LRRLERLAAE TPQSIDLVAG WFDEALAVKL VTAGLLTLGM
LNARISAGGR WFSTLPAVGI AKARRIERHL ATLLPREVQP PKPLFALSAT PALWGTSSLS
RASDEQMDAT SGDLVVANVT NAALLRPLLD VDSDLQAVQS WIQARAGSLA TATLYQREAH
RLLLWLQYEC RGATLTQMTV ADCGAFMVFL QHIPLRWISR ARAAPGQSGW APFRGQLSHA
SCRQTIVIIA SMFAWLQSAL YLSSNPWVLV NQSTGDDPGK KMLDTKALSE AAMLEVLRFI
DAQAPSPSRA RIRFILLFVE AVGLRSAELL SATLGDLRME PEGWVMQVHG KGSKNRIAAV
PGQALHALQD YLLVRGLGSI QAAPPTARLL ASAVDPMAPV GYQALYEHVR GWLAKAVRAS
SLPANERERL AGATTHWLRH TFGTRAIARE VPLDVIQAQM GHASIQTTTA IYGRAPIKRR
VDELGKAFG
|
|---|
| |