Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_1499 |
Symbol | |
ID | 4626555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 1845512 |
End bp | 1847374 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 639796702 |
Product | TPR repeat-containing protein |
Protein accession | YP_942912 |
Protein GI | 119945232 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0511559 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATTGCAT CGATAGTAAA AACCGGCCGT CAAAGACTAA CAGGTAATTC TATTATTTAC TCTTTGATGT TCGCTACCCT GCTGTTAATT TCATCCCCAC AAGCTATCTC AATGCAGTTG CTGCAGTCAA CATTTTTAAT CGATAGACAC GAGCAAGGCG ATATTATTGA CTTGTCCAAC AGGCCTGATG CAAAGGCTTT TTCTGATATC AATAATTTAT TGGCGATCAA AGACTATGCA ACGGCTATCG AAAAAGCGAA CACTGTATTA AAAAATAATC CGAATTCAGG TCTGGCAAAT GAAGTACTTG GCACCGCCTA TTTTCTCAAC AAACAGCAGG AAAAGGCGGC CACCTCATTA CAAAAAGCGA TCGAGCTAGA GCCCGGGCAG AGTGGAGCAC TGACTAAATT GGGCATAATC AAGATGGAGA GTGGTGATAT TTTCGAAGCG GAAAAATTAT TGTTGAAGGC GATAGAAATT ACTCCAGCAG ATCGGTTTGC ACATCAACGC CTTGGTTTGT TATATGAATA TCAGGCTAAG GACCAGCGAG CGATACATCA TTTTCAACTT GGCCTCGAAG GAACCCATGA ATCTTATCTC GGTGTTGCCG TCAATCTTGG GCGCTTATTG AATAAATCAG GCAACTTTGC TGTGACCATT GCGGTACTTG AGCCGCGCGT CTTACTTTAC GAGACGAATA CTGATGCACA AATGGTGCTA GCAACTGCCT ATCTGGCAAC CGGCAATTAC CTCGACGCTC GCATGCGATT TCAGCATGTA TTGCAGTCAG GGCTGTCGAT GCCTAAGGCA TTGCTTGGGC TTGCCAAGGC ACAACGTGGC GAAAGTGATT TTTCTGCCGC TATGAAGACG ATAAATAAAC TTGTTAAACA AAAACCAGAT TCTGCTCTGG CGCAGATGGA AAAAGGCGAG ATTTTACTGA GGTTAGACCA AAGAAAAAAA GCCAACAGCG CCTTCAATGA AGCCGTTGCA CTAGGCTTAA GCCGCAGTTA TGTCAATCAA CGTATCGCCA AATTTCACCT CGATAATAAG GATTTTGCAC AGGCGCGTGA TATTTATCAG GCGATGGTCG ATGATAAAAC TGCAGATGTG TTCACCTATG GTCAATTATC CGAATTATTG ATGGGTGAAG GCAATATCGA AAAAGGTGAG CTTATATTGC GTAACGGCAT TGAACGTTTC CCGAACGATG CCTATTTGCA CCTGAGGCTG GGAAGTTACC TGGCATCTAT CAGAAGTTAC GAGGAATCAC TCCCTATACT GGAAAAAGCC ACAGAGCTTT CAGCTGATGA TATCGCTATC TGGAAAGTAT ATGCGTTGGC ACTTGCACGC ACTGACCACA ACGAGGATGC CGTCAATGCC GCCGCTCGAC TCTATGTATT GCAACCCAAC AGAACTGAGC CAGCCATCTT CTATGCGACT CAGTTAGAAG CAAATAAACG TTTTGATGAG GCAGAAACTC TCTATCGAAA AATAATTCAG GCAGTACCCA ATCATGCGCT GGCATTAAAT AATCTGGCTA ACATCCTTGC TGATAAAGGT GATCATAACG AAGCGGAAAC GATGGCAAGA CGCGCTGTCG GTGTGGTGAG TGATAATGCC AGCATACTGG ATACGTTAGG TTGGGTTCTC TACAAACAGG GTAACCTGAA TGAATCACTA GAGGTGCTGG ATAATGCAAA CAAGCTTGCA CCGGAAGCTG CTGTTATATG GTATCACAAG GGTGTGGTGC TGGATAAAAC AGGTCGACGT GCTGAAGCAA AAGTAGCTAT TGAAAAAGCC CTTTCAATCA ATTCAAAGGC GAATTGGGCA GATGCGGCTG GCGTGCTTCT GACGCAACTA TAA
|
Protein sequence | MIASIVKTGR QRLTGNSIIY SLMFATLLLI SSPQAISMQL LQSTFLIDRH EQGDIIDLSN RPDAKAFSDI NNLLAIKDYA TAIEKANTVL KNNPNSGLAN EVLGTAYFLN KQQEKAATSL QKAIELEPGQ SGALTKLGII KMESGDIFEA EKLLLKAIEI TPADRFAHQR LGLLYEYQAK DQRAIHHFQL GLEGTHESYL GVAVNLGRLL NKSGNFAVTI AVLEPRVLLY ETNTDAQMVL ATAYLATGNY LDARMRFQHV LQSGLSMPKA LLGLAKAQRG ESDFSAAMKT INKLVKQKPD SALAQMEKGE ILLRLDQRKK ANSAFNEAVA LGLSRSYVNQ RIAKFHLDNK DFAQARDIYQ AMVDDKTADV FTYGQLSELL MGEGNIEKGE LILRNGIERF PNDAYLHLRL GSYLASIRSY EESLPILEKA TELSADDIAI WKVYALALAR TDHNEDAVNA AARLYVLQPN RTEPAIFYAT QLEANKRFDE AETLYRKIIQ AVPNHALALN NLANILADKG DHNEAETMAR RAVGVVSDNA SILDTLGWVL YKQGNLNESL EVLDNANKLA PEAAVIWYHK GVVLDKTGRR AEAKVAIEKA LSINSKANWA DAAGVLLTQL
|
| |