| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2264 |
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| Symbol | |
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| ID | 4604514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2727592 |
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| End bp | 2730075 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639781661 |
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| Product | ClpX, ATPase regulatory subunit |
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| Protein accession | YP_928139 |
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| Protein GI | 119775399 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000642696 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000131264 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGTTACAAC AACTAAAACG ATTCTTGATT GCCGGTGTGG GAGCACTGGT TTTGGTTGGG
GGCCCTGTTG CAGCAATTAC GCCGTCGCCG CAAATGATTG AACAATTTAA AAATCTGCCC
AAAGCGGAGC AGGAGCGTAT TGCACGGCAA TATGGCATAG ACCCGAGTAT GCTTTCCGGC
CAAGCCACCC AACCGACAAT CGTTAATCCT GAAGTTGTAG CACCGCGAAA TACAGGTTCA
ACGACCGAAG TCGTTAACCA AAGCGAGACT GACGCATTTA ATCAGGCCAC AAAAACCGAA
TCTCAGATAG AGGCCCGTGA AGAAGAACTG GAGAAGCAGC TCAAGCGCTT CGGATACGAC
ATGTTTGCCG GTGAGCCTTC TACCTTTGCC CCCGTGTCTG ACGTACCCGT ACCAGCCGAA
TACATGATGG GTCCGGGTGA TGTACTAAAT GTGCAGCTTT ACGGCAAAGA GAATAAGAAT
TTCAGCCTTA CTGTTGGCCG CGATGGCTTG GTGCAATTCC CCGATTTGGG CCCCATCTCC
CTGGTGGGGA TGAGCTTCTC TGAAGCCAAA AATTTCCTCA CTGATAAAAT CGCACAATCC
ATGATTGGTA TTCAGGCCAA TATCACCATG GGTGAGCTGC GCTCCATCCG CATTTTTGTG
GCCGGTGATG CCTATCGCCC CGGCTCCTAT ACCGTCTCCA GCCTCTCTAC CATCACTCAG
GCACTGTTTG TATCTGGTGG CATCAACGAA ATTGGCTCTT TGCGTAACAT TCAGCTCAAG
CGTGCTGGCC GCACCGTGGG TACCTTCGAT TTATACGACT TGTTGCTCGC CGGAGATGCC
TCAAAAGATT TGCGCCTGCA ATCAGGTGAT GTGGTGTTTA TTCCTTCAGT TGGTGGCCTG
GTCAGTGTAA CAGGAGAGGT TCGCCGCCCA GCTATATATG AAATCAAAGC CAATGACACC
ATGGCCGACG TACTTAACAT GGCCAGTGGT GCCAAACCGG GCGCCTATCC AGAAGCCAGT
ACCATTGAGC GTTTCAGCAA AGATGTAAAA ACCGTAATTA ATGTGGATTT AACTCAGGCT
TCAGGCCTCA GTGTTAAGGC CAAAGCGGGA GATTTGGTGA GAGTAAAATC CACCTCTACC
CGTATTGATA ATGCTGTAAC CCTGGTGGGG GCAGTTGTTC GTCCGGGTAA ATATCAGTAC
CGCAATGGCA TGCGCCTTCG CGATATGTTG CCGTCAATCT GGGGTGATTT AACCCTGAAT
GCCGACTTGG ATTACGGCCT GCTGGTACGT GAAATTAACC AGCGTGGTGA TGTAAAGGTG
ATTCAGGTTT CTGTGGGCAA AGCCATTAGC GGTGATGACA GTGCCAATAT CGCCCTGCAG
CCGAGAGACA CCCTGATGGT ATTTGATTAT GCCGACAGAG CCACACTGCT CGAGCCTGTG
ATTACCCAAC TGCGCCAGCA AAGCCGCTTT GGAGATGCGA TAAAGCTCGC CGATATTAAC
GGCAGTGTGC GTTTCCCCGG TAAGTACCCG ATTACAGAAG GCGCCACCAT TAAAGATTTG
CTGGTCGCTG CTGGTGGCCT GAAGGAGGGG GCTTATACGC TTTCTGCTGA ACTTACCCGC
CAGAATATCT CCGAGCAAAC CGGCGTTACC GTAACCCATC AACAGCTGAG TTTGCAGGAC
GTATTATTGA ATGACCCATC CGCCAATATC GCTCTGCAAA GTCGTGATGT GTTAACTGTG
CGCGATTTGC CCGACTGGCA AGACACCCGT TGGGTAACCA TAAAAGGTGA AGTGCGGTTC
CCGGGTACCT ACAGTATTCA ACGTGGTGAA ACTCTTAAGC ACGTGCTCAG CCGTGCAGGC
GGTCTGAGTG AGGATGCTGC GCCACGCAGT GCCGTGTTCT TGCGCGAATC GGTAAAGCAA
AAAGAAAAGA CCGAGCTGCT GAAGTTATCC GACGAGCTGC GCCGTGAAAT TGCTGCCAAG
GCGCTCACCA AGGATACCCC CACAGTGGGC TACGCCGATG CCCAAAACAT GCTCAAAGAG
CTTGAAAATG TAGAGGTACT GGGTCGTTTG GTGGTGGATA TCAACGCCAT TCAACTCGGT
ATCGATGAGG CCGACCTTAA GCTTGAAGAC GGCGATGCCT TGTTTATCCC GGCGCAAAAT
CAAACCGTAT CTGTAATGGG GCAGGTACAG CACCCCAGCA CCCACAGATA CAAAAAGGGC
TTTACCTTCG ACCAGTATCT TGAGCTGGCC GGTGGCCCTC GTAAACGCGC CGATGACGAC
CGAGCATACA TCCTGCGTGC CGATGGCTCT GTCGCCATGC CTGGCAGCTC CTATTGGTTC
AGCACTGACG AAGAGATGCA GCCCGGTGAC ACCATCGTCA TGCCGCTGGA TACAGAGTAC
AAAGACAACC TGACATTGTG GAGCCAGGTA ACGCAGATCA TCTATAACAC CGCAGTTGCA
GTAGCGACGA TTTCAGGGCT GTAA
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| Protein sequence | MLQQLKRFLI AGVGALVLVG GPVAAITPSP QMIEQFKNLP KAEQERIARQ YGIDPSMLSG
QATQPTIVNP EVVAPRNTGS TTEVVNQSET DAFNQATKTE SQIEAREEEL EKQLKRFGYD
MFAGEPSTFA PVSDVPVPAE YMMGPGDVLN VQLYGKENKN FSLTVGRDGL VQFPDLGPIS
LVGMSFSEAK NFLTDKIAQS MIGIQANITM GELRSIRIFV AGDAYRPGSY TVSSLSTITQ
ALFVSGGINE IGSLRNIQLK RAGRTVGTFD LYDLLLAGDA SKDLRLQSGD VVFIPSVGGL
VSVTGEVRRP AIYEIKANDT MADVLNMASG AKPGAYPEAS TIERFSKDVK TVINVDLTQA
SGLSVKAKAG DLVRVKSTST RIDNAVTLVG AVVRPGKYQY RNGMRLRDML PSIWGDLTLN
ADLDYGLLVR EINQRGDVKV IQVSVGKAIS GDDSANIALQ PRDTLMVFDY ADRATLLEPV
ITQLRQQSRF GDAIKLADIN GSVRFPGKYP ITEGATIKDL LVAAGGLKEG AYTLSAELTR
QNISEQTGVT VTHQQLSLQD VLLNDPSANI ALQSRDVLTV RDLPDWQDTR WVTIKGEVRF
PGTYSIQRGE TLKHVLSRAG GLSEDAAPRS AVFLRESVKQ KEKTELLKLS DELRREIAAK
ALTKDTPTVG YADAQNMLKE LENVEVLGRL VVDINAIQLG IDEADLKLED GDALFIPAQN
QTVSVMGQVQ HPSTHRYKKG FTFDQYLELA GGPRKRADDD RAYILRADGS VAMPGSSYWF
STDEEMQPGD TIVMPLDTEY KDNLTLWSQV TQIIYNTAVA VATISGL
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