Gene Sama_0539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0539 
Symbol 
ID4602794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp665065 
End bp665397 
Gene Length333 bp 
Protein Length110 aa 
Translation table11 
GC content54% 
IMG OID639779875 
Productperiplasmic divalent cation tolerance protein CutA 
Protein accessionYP_926419 
Protein GI119773679 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1324] Uncharacterized protein involved in tolerance to divalent cations 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00953533 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00314697 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCACAGT CCATGGATGA CTATATCCTG GTTATGACCA CCTGCCCCTC AGAGGATGTC 
GGCCTTGCCA TTGCCAAACG TCTGGTGAGC AACAGCCTTG CTGCCTGTGT GCAGCAGGGT
GGCCCTGTGA CGTCGGTGTA CCATTGGCAA GGGAAACTCT GTGAAGACAG GGAATATCCC
TTATTCATCA AGACCCGGCG GGCACTGTAT GCCGAGGTGG AACGGGCGAT TTCTGAGCTG
CATCCCTATG AGTTGCCTGA GATTATCGCG ACGCCCGTAA CCGAGGCCCT GCCCGGCTAT
TTGAACTGGA TAAACGACAA TACACAATCA TGA
 
Protein sequence
MAQSMDDYIL VMTTCPSEDV GLAIAKRLVS NSLAACVQQG GPVTSVYHWQ GKLCEDREYP 
LFIKTRRALY AEVERAISEL HPYELPEIIA TPVTEALPGY LNWINDNTQS