Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0403 |
Symbol | |
ID | 4602658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 500902 |
End bp | 502491 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639779739 |
Product | drug resistance transporter, EmrB/QacA family protein |
Protein accession | YP_926283 |
Protein GI | 119773543 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCGA GTATCGCGTT GCCGCAAACC GATGTGGATT ACGGTGTAGG CAGTCGCCGC GCCTGGATTG CCGTGATGGG CGGCCTTATC GGGGCATTTA TGGCGATTCT GGACATCCAG ATCACCAATG CCTCCATGAA GGAGATCCAG GGCAGCCTGG GGGCGACTCT TGAAGAGGGC TCTTGGATTT CAACCGCTTA TCTGGTGGCT GAAATGATAG CCATTCCCCT GTCGGGATGG CTCAGTACCG GTTTGTCGGT GCGCCGTTAC CTGCTGTGGA GTACTACCGC CTTTATTCTC AGCTCGCTGC TTTGTTCCAT GGCATGGGAT TTAAACTCCC TGATTGCATT TCGTGCCCTG CAGGGATTCT TTGGCGGCGC CCTCATTCCG CTGGCGTTTC GTCTGATTGT GGAATGCCTG CCTTTTGAAA AGCGTGCCAT GGGGATGGCG CTCTTTGGGG TCACGGCAAC CTTTGCGCCT TCCATCGGGC CTACTCTGGG TGGCTGGCTA ACCGAGCATT TCAGCTGGCA TTTTCTGTTC TATATCAATG TGCCACCCGG ACTTCTTGTA CTGTGGATGC TGGCCTATGG CCTGCAAAAA GGCCCCATCG ATTGGGGCAA ACTTGGCAAG GTGAGCTGGG TTGGTATCGC CACCATGGCG CTCGGCCTTG GCTGCCTTGA AGTGGTGCTG GAGGAGGGGA ACCGAAAAGA CTGGCTCGGT TCCGACGTTA TCCGTGATTT GGCCATCATA GCCGCCATCA ACCTGGTGCT CTTTGTCTAT TTGCAGCTGA GGAGCCGCAA CCCGCTGGTT AACCTGCGTC TCTTAGCCCA CAGGGACTTT GCGTTGTCGT CGTTGTCGTA TTTTTTGCTG GGACTGGGGC TTTTTGGCGC GATTTACCTT ATTCCGCTTT ACCTGTCGCA GATCCATAAT TATTCGGCGC TGGAAATTGG CAAGGTCATC ATGTGGATGG GGTTCCCCCA GCTTTTGGTG CTGCCTCTGG TACCTAAGTT GACCCAAAAG CTGGATCCCC GCTATCTGGC GGCCTGGGGC TTTTTGTTGT TTGCTTTGAG TTACTATCTC AATGCCCATA TGACGGCCCA GTACGCCGGT GAGCAGATGA TTCTGGCGCA AATCGTCAGG GCGCTCGGGC AGCCATTCGT GCTGGTACCC ATCGGTATGA TAGCGACCAT GCATTTGCGT CAGGAAGATA CCCCAAGCGC GTCTACGCTA CTGAATCTTA TCCGAAACCT CGGTGGTGCC TGTGGCATTG CGCTGGTGGC GACCATGCTG GATAACCGTT TCCGCCAGCA TCTGGCGTAC TTGAAAGAGT CGCTGCCTGC GGTCAGTCAG CAGGCGCATA CCTTCCTGCA ACAGCAGGCA AGTAGCCTGT TTGCAGCCGG GGCCGATCCT ATGGCGGCCG ATTCGATGGC CCGGAAGATG CTGTCTGACA CCCTGGTGCG GGAAGCTTAC ATGCAGGCCT ACAACGATGT GTTCTTTGCC ATCGGGGGCT TGCTGTTGGT TGCCGTCGTG GCTGTGTTGC TCATCAGACC TTCTTCTCAG GCTGGCAATA GCGGCGCAGC CGGACACTGA
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Protein sequence | MSASIALPQT DVDYGVGSRR AWIAVMGGLI GAFMAILDIQ ITNASMKEIQ GSLGATLEEG SWISTAYLVA EMIAIPLSGW LSTGLSVRRY LLWSTTAFIL SSLLCSMAWD LNSLIAFRAL QGFFGGALIP LAFRLIVECL PFEKRAMGMA LFGVTATFAP SIGPTLGGWL TEHFSWHFLF YINVPPGLLV LWMLAYGLQK GPIDWGKLGK VSWVGIATMA LGLGCLEVVL EEGNRKDWLG SDVIRDLAII AAINLVLFVY LQLRSRNPLV NLRLLAHRDF ALSSLSYFLL GLGLFGAIYL IPLYLSQIHN YSALEIGKVI MWMGFPQLLV LPLVPKLTQK LDPRYLAAWG FLLFALSYYL NAHMTAQYAG EQMILAQIVR ALGQPFVLVP IGMIATMHLR QEDTPSASTL LNLIRNLGGA CGIALVATML DNRFRQHLAY LKESLPAVSQ QAHTFLQQQA SSLFAAGADP MAADSMARKM LSDTLVREAY MQAYNDVFFA IGGLLLVAVV AVLLIRPSSQ AGNSGAAGH
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