Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_3876 |
Symbol | rpsD |
ID | 4598011 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | - |
Start bp | 4094017 |
End bp | 4094625 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639778482 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_925061 |
Protein GI | 119718096 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCCCGTT ACACCGGACC CATGACCAAG AAGTCGCGCC GCCTCGGTGT CGACCTCGTC GGTGGCGACT CGGCTTACGA GCGTCGCCCC TACCCCCCCG GCCAGCACGG CCGCGGCCGG ATCAAGGAGA GCGAGTACCT CCTCCAGCTC CGGGAGAAGC AGAAGGCGCG CTTCACCTAC GGCGTCCTCG AGAAGCAGTT CCACAACTAC TACACCGAGG CCTCGCGTCG CGCCGGGAAG ACCGGTGACA ACCTGCTCCA GCTGCTGGAG TGCCGCCTCG ACAACGTGGT CTACCGCGCC GGCTTCGCCC GGACCCGTCG CCACGCCCGT CAGCTCGTGA CGCACGGCCA CTTCAAGGTG AACGGCAAGA AGGTCGACAT CCCGTCCTTC CAGGTCACCG CGCACGACGT CATCGACGTC CGCGAGAAGT CGCTGGAGAT GACCCCGTTC ATCGTGGCGC GCGAGACCCA CGGCGAGCGC GTCGTGCCCG CGTGGCTCGA GGCGATCCCG TCGCGGATGC GGGTCCTGGT CCACCAGCTC CCCGTGCGCG CGCAGATCGA CATCCCGGTC CAGGAGCAGC TCATCGTCGA GTACTACTCC AAGAAGTAG
|
Protein sequence | MARYTGPMTK KSRRLGVDLV GGDSAYERRP YPPGQHGRGR IKESEYLLQL REKQKARFTY GVLEKQFHNY YTEASRRAGK TGDNLLQLLE CRLDNVVYRA GFARTRRHAR QLVTHGHFKV NGKKVDIPSF QVTAHDVIDV REKSLEMTPF IVARETHGER VVPAWLEAIP SRMRVLVHQL PVRAQIDIPV QEQLIVEYYS KK
|
| |