| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2015 |
|---|
| Symbol | |
|---|
| ID | 4476379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2402165 |
|---|
| End bp | 2405524 |
|---|
| Gene Length | 3360 bp |
|---|
| Protein Length | 1119 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639726597 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_869652 |
|---|
| Protein GI | 117920460 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000673901 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCGTTTA GACTGAAAAC AATTTTAGGG ATCGCCTTAA TCGAAGGTTT ATTACTGTTT
TTGCTGGTGT ATACCAGCAT TAACTACCTT AAGTTGTCTA ATCAGTCGCA AATTGAAAAA
CGGGCCGAAA CCACGTTAAC ACTGTTCTCT GTGGCGGCGC AGGATGCGGT GATCAGTAAC
GATCTGGCGA CATTACATTC GTTAATTCAA GAGCTGTTAA GCCACAGCGA AGTCTTGTAT
GTAACAGTGT CTGATCAGAG CCGCATTTTG GCCTATGGCG GCGCCGATAA ATACATTCAG
GTTTCGCATC AAGCGGATAA ACATCTGGAT CAAGTCAAAG ATGGGATCTT CGATCTCGAA
TATCCCATTG AAGTCAATGG CTATCTGTTC GGCAAAGTGA ACATGGGGTT TGAGACCCAG
AGCCTTGAAA ATCTGGTTAA TACGGTGACA CAACAGATCC TCTCAATCGC TGGGGTTGAA
ATGTTGCTGG TGGCCTTGTT TTCATTGCTG CTTGGGCATT ACCTCACCCG TAACTTAACT
CAGCTAACCA GCGCCTCTAA ACGCATTCTC GCGGGCGAGA TTGGGGTGAG GGTGCCTGTC
AAAGGCAAGG ATGAAATCGC CCAGATGACC CGCGCCTTTA ACAATATGGT CGATAAAGTC
GATGCCAGAA CCAAGGCATT AGAGGCGGCA AATATCCGTC TCAACACCAT TCTTGAGTCG
GCGGTCGATG GCTTTGTGAT CATCAATGAA TTCGGCATCA TTACCGACAT CAACCCCGCC
GTCAGTCGAC TCTTTGGTTA TGCCCATAAT GAACTGATTG GCCAGAATGT ATCGATTTTT
ATGCCGTTCG ACCAAAGGCC ATTGCACGAT GGTTACATTC AGCAGTACTT CACAACCCAT
GTTGCCAAAA TCATCGGCAC CAGCCGCGAG TTAACGGCGC AACGTAAGGA CGGTCAGCTA
TTTCCTATCG CCTTATCCGT GTCGCAAATG AGCATCGACA ATCGGGCGAT GTTTATCGGT
TTAGTCAAAG ACTTATCCGA AGCGAAACGC AAAGAAATCG CCGCAGCGAA AACCGAGTCA
GTGTTGCTTG CCACCTTAGC GGCGAGCCAA GATTGCTTAA TAACCATCGA TATGTCGGGC
AAAGTCATTG AATTTAACCT CGCGGCCACC AGACTGTTTG GTTATAGCCG CGAGGAAGCT
GTCGGCGCCT TATTGGAGGA TTTAATTATC CCCGAAGACA AACAACAGGG GCATAAGCGA
GGCATTGAAC GTTATCGCCG CACTGGCGAA GGGAAAATGC TCAATAAGCG GGTCGAATTA
CTCGCGCGCT GCAAGGCTGG AAATCTAATC CCTATCGAGC TTGAGGTGGT ACCGATCCAA
CTCGGGGATG AAGTGCTGTT TACGGCATTT TTACGGGATA TTTCTGAGCG CAAAGCCAAC
GAGCAAAAAC TACAGCAGGC AAAAGAACAA GCCGAGCAGG GCAGTAAAGT GAAGTCGCGT
TTCTTAGCCA CCATGAGCCA TGAGATCCGC TCACCGCTGA ACGCAATTTT AGGCGGGGTG
GAATTGTTGC TCGACTCATC CTTAAGCAAA GATCAACGCA TTCACGCCAA TATCGCGCGG
GAAGCGGGCA GTGCTTTGCT GCATACCATT AACGATATCT TGGACTTTTC GAAGATTGAA
GCCGGGCAGA TGGTGCTCGA GTCCCATGAG TTTGAGCCAG ATAAACTGGT TGCTCAAGTG
CTGCAAATTC TTGAGCCCAA AGCCTTCGAA AAGGGGTTAG AGCTGGTCAG TTTTGTGAAT
CGAAATGTGC CAAGAACCGT GGTTGGCGAT CAGCAGCGCT TACGCCAAGT GCTGCATAAC
CTCGTCGATA ATGCGATTAA GTTTACTGCA TCCGGCACCA TCACAGTGGA AATGTGGATC
CCCGATAATC ACCAAACCGA GGTGCAACTC TATTGCCGTG TCACAGACTC TGGTATTGGT
ATCTCTGCGG AGGCGCAAAG CAAACTATTC AAAGAATTTA GCCAAGTACA CGATACCCAT
AACACAAACT ACAAGGGTAC GGGCCTAGGT TTGGCCATCT GTAGCGAGCT TATCACTATG
ATGGGCGGCA CGATCGAGCT GCAAAGTGAG CTTGGTCAGG GAAGTCGCTT TACTTTTTAT
GTGTCTTTGC AATTGCTTGA GGGAAATTTC TGCCACAGTC ATTATTTCCC CGCCCATTCT
CGGGTTCTGC TCGCCCACCA TGATGCAACT TGGCTATCGC TCGTCTCGAA ACAATATTCG
CAATACGGGG TAGAGACGGT TGAAGTGATG GACTGGCCAT CAATCAAACG GGCGAAAAAA
ATAAAAGGTC AATTCAACCT AATTTTGCTC GATGAAGGCT TCTTTTTGGA TGTAAACGAA
CAGGATGTCA ATCGATTAAG GCAAGCGCAT TTAACCGCCG ATGGTTCTAT GGTGGCCTTG
GTATCGGGAA TGAGCACCGA AATAACCCAT TCACTCGCCA CGTTAGGGTT AGATCAAGTC
GTCAATAAGC CCCTAAGCCG CGCCATGCAG TTAGCACTCT TGAGTAAAGA TGCGCTGGCG
AATGAGTTTG AAGAGGAGTA TGTGGCCCAA GAGAAATTCC AAGGCCATAT CCTCCTCGCC
GAAGACAGTC CCGCGAACCA AATTATTGCC GGAACCATGC TCACCAAGGC GGGGTTTGAT
ATCACTTATG CCTGCAACGG GCTTGAAGCG GTTAAGTTGG TCGCCGAAAA GCCCTTCGAT
CTCGTCTTGA TGGATGTACG TATGCCCGAG ATGGATGGAC TCGAGGCCAC GGAAGTCATC
CTGCAAAATC ACCCTGAGCA AGTTATTCTG GCGATGTCGG CCAATGTGAT GAAAGAAGAG
ATAGAGCATT GCTATCGAGT CGGGATGAAG GACTTTATCG CTAAGCCCGT CAAACAAAAG
ACCTTACTAC ATGCCATTCA AAAATGGTTG CCCAATGCCG TTGTCAGTTT ACCAAGCTCA
CATAAACCCG CTGAAAATAC AGCGAGTTTA CTCGATGAAC AACTCCTAGC GGAGCTTGAA
CAAACCTTAG GTAAAGCGAG TCTCTCGAAC ATGATGACAA TCTTCTGTGA TGAATTGGCG
CAGCGGCTTA ATCAGTTAAG CGAACTCGAT TCGACGCAAG TGGACGAGAT TGAAGATCAA
GCGCACACTC TAAAAAGCAG TTCAGGCAGT TTTGGGGCGA CGGCGCTGTT CTTATTAGCT
CAGAAATTAG AAGCCTGTGC CCGTCAGCAA CAGCTCGGTG CCATTCCCGA GCTGATGGCA
CAGATTAATG TCCTCGGAAA ACAGACTCAC AGCCTATTAA CGGAACGATT TATTCAATAG
|
|---|
| Protein sequence | MSFRLKTILG IALIEGLLLF LLVYTSINYL KLSNQSQIEK RAETTLTLFS VAAQDAVISN
DLATLHSLIQ ELLSHSEVLY VTVSDQSRIL AYGGADKYIQ VSHQADKHLD QVKDGIFDLE
YPIEVNGYLF GKVNMGFETQ SLENLVNTVT QQILSIAGVE MLLVALFSLL LGHYLTRNLT
QLTSASKRIL AGEIGVRVPV KGKDEIAQMT RAFNNMVDKV DARTKALEAA NIRLNTILES
AVDGFVIINE FGIITDINPA VSRLFGYAHN ELIGQNVSIF MPFDQRPLHD GYIQQYFTTH
VAKIIGTSRE LTAQRKDGQL FPIALSVSQM SIDNRAMFIG LVKDLSEAKR KEIAAAKTES
VLLATLAASQ DCLITIDMSG KVIEFNLAAT RLFGYSREEA VGALLEDLII PEDKQQGHKR
GIERYRRTGE GKMLNKRVEL LARCKAGNLI PIELEVVPIQ LGDEVLFTAF LRDISERKAN
EQKLQQAKEQ AEQGSKVKSR FLATMSHEIR SPLNAILGGV ELLLDSSLSK DQRIHANIAR
EAGSALLHTI NDILDFSKIE AGQMVLESHE FEPDKLVAQV LQILEPKAFE KGLELVSFVN
RNVPRTVVGD QQRLRQVLHN LVDNAIKFTA SGTITVEMWI PDNHQTEVQL YCRVTDSGIG
ISAEAQSKLF KEFSQVHDTH NTNYKGTGLG LAICSELITM MGGTIELQSE LGQGSRFTFY
VSLQLLEGNF CHSHYFPAHS RVLLAHHDAT WLSLVSKQYS QYGVETVEVM DWPSIKRAKK
IKGQFNLILL DEGFFLDVNE QDVNRLRQAH LTADGSMVAL VSGMSTEITH SLATLGLDQV
VNKPLSRAMQ LALLSKDALA NEFEEEYVAQ EKFQGHILLA EDSPANQIIA GTMLTKAGFD
ITYACNGLEA VKLVAEKPFD LVLMDVRMPE MDGLEATEVI LQNHPEQVIL AMSANVMKEE
IEHCYRVGMK DFIAKPVKQK TLLHAIQKWL PNAVVSLPSS HKPAENTASL LDEQLLAELE
QTLGKASLSN MMTIFCDELA QRLNQLSELD STQVDEIEDQ AHTLKSSSGS FGATALFLLA
QKLEACARQQ QLGAIPELMA QINVLGKQTH SLLTERFIQ
|
|---|
| |