Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_3446 |
Symbol | |
ID | 4483178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 4303732 |
End bp | 4304670 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639724194 |
Product | LysR family transcriptional regulator |
Protein accession | YP_867337 |
Protein GI | 117926720 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000932924 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGGTATT CAGTGAAAGA AGGACTGAAC AAATTCGACC TTAATCTTTT GGTAGCTTTT GATGCACTGA TGAGTGAGCG TGGGGTGACC CGTGCTGGAC GTCGTTTGGG CATTACGCAG GCTGCTATGA GTAATACTTT GCGGCGTTTG CGCACCGCTT TTGATGATCC GCTGTTTATC AAAACCGGGG CACGTATGGA GCCGACTCCC CGGGCTATGG AGTTGTCGGG CATGATCGAA GCGGCGTTAA AGCAGGTGCA CGTGGCCCTG GATAACGACA GTTTTGATCC GGCCAACTCC CACTATGTGT TTCGGGTGGG TATGGTGGAC TATACGGTGC CGTTGGTGTT TCCGGCGCTG TTGGATCATT TGGAAAAGTA TGCCCCCAAC TGCATCCTTG AGGTGGTCAA TACCGGTGAT TTTGAAGGGG AGATGCTTGA GTCGGGTGAG GTGGATCTGG TGCTCAGCCG GTTGGATCAA GCCCCCCGGG GATTAAAATC GCGTGTGGTG GGGGAGATCC CGTTTGTCTG CATCTATCGC CCGGGCCATC CCTTAATCAA AGAGCCTATG ACCCTGGAGC AGTATCTGCA AGCTCGCCAT GTGCACTATT ACCCACCCAT GGTCAAAGAG GGTTTGGTCG ATTTAGGTTT AAAGGCGATC AATCAAGAGC GGAATGTGGT GGTGCGGTTG GACTCGTTTG GGATGGTGCC AACTTTGGTG GCTGAAACCG ATCTGATTGC CGCTGTCACC CACACCTCGG CCCATGTGAT TGCGCCGGCT ATGGGGCTAA AAGTGCAACC GCTACCCTTT GAGGCACCGC CGCTGCAGTT TGTTATGGTT TGGCATGATC GTTCTGAAGA GAGCGCCCCG CACCAGTGGT TCCGGGAGCA GGTACTGCAC ATGTTGATCT CTTTGGAGGG GATGGTAGGC AAGGTATAA
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Protein sequence | MGYSVKEGLN KFDLNLLVAF DALMSERGVT RAGRRLGITQ AAMSNTLRRL RTAFDDPLFI KTGARMEPTP RAMELSGMIE AALKQVHVAL DNDSFDPANS HYVFRVGMVD YTVPLVFPAL LDHLEKYAPN CILEVVNTGD FEGEMLESGE VDLVLSRLDQ APRGLKSRVV GEIPFVCIYR PGHPLIKEPM TLEQYLQARH VHYYPPMVKE GLVDLGLKAI NQERNVVVRL DSFGMVPTLV AETDLIAAVT HTSAHVIAPA MGLKVQPLPF EAPPLQFVMV WHDRSEESAP HQWFREQVLH MLISLEGMVG KV
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