| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3259 |
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| Symbol | |
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| ID | 4481240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 4063158 |
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| End bp | 4065650 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639724009 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_867155 |
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| Protein GI | 117926538 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0701174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGGC AGGAAAAGAC CATGAGTCGG CAAATGACAA TCCATAAATA CGCCCCCTGT
GTCTCCTGGA AGACGGGTTT GGTATTGGGT TTGGTGGGGC TGCTTAGCCT CTCAGCCTGT
CAAACGCCTT CCAGCATTAC GCCGTCCAAG CAGCATTTCC TGCGGCCAAC GGATCCACCC
CCTGGCGCCC TGACTACAGC CTTGCCGCCA GAGGCCCAGG ATGTGGTGGC CGATACCGGT
CAAGCGGATA TGGAAGAGGG GGATCAAATC TCCATTACGG TGAACGATAC CCCCGCCCGT
ACAGTGTTGT TGGCGTTGGC GCGGGATACC AAGAAAAATT TGGATATCCA CCCCGGTATT
CAGGGTAATG TGACCATTTC GGTGGTCAAC CAAACCCTGC CTCGGGTGTT GGAGCGTATC
GCCAAACAGG TAAACATGCG CTACGAGATC AATGGGGACA CCATCCAGGT CTACCCAGAC
AAGGCGTTCC TGAAGATCTA TCAGGTTGAC TATGTCAATA TTGTGCGTAG CAGCAAGACC
ACCAACAAAA TCTCGACACA GTTAGATACC AACAGTGCCA TGGATCCTGC CATGGCCGGT
AAAGAGGTGC CCAACCAGTC AGACATGACC CTAACCACCG ACTTTAAAAA CGACTTCTGG
GCCAGTCTGA CCGCCAACAT TACGGCCATT GTCAGCCAAG GGCAGGCATC CGCTCCCGAA
GCTTTGCCCG CGATGGCGAA TGGTAGTTTG CCCCTGCCCA GTGCCGCACC GGGTGGCACT
GCCTCGCCCG CTAAGGCAGA ACCCAAAGTG ACCAGCAGTG GGGTGGTTTC CATCAATCAG
GAGACGGGGG TTATCAGCAT TTTTGCCACC GCTGCGGACC ATGAGCGCAT TGGGAGCTAT
CTGGAATCTT TGATGGAAAA TGCCCACCGT CAGGTGCTGA TTGAGTCCAC CGTGGTTGAG
GTCACGCTCA GTGATGATCA TCAGCAAGGG GTGGATTGGG CCAGCATTAA TGACGATGGC
TTAAGCCGTC TGTCGGCTCC TTTCTTTGCC AACTCCATTG GTGTGAATGG GGGTTCCCGG
CCCATGGCGT TGAGCGATTT ACCGGTCTTC TCGCTGCCCA CCAGTATCAA TAGTGGTTTT
GGTAAAATTA CCTCAACGGT GCGTGCGCTG GCTAAATTTG GGAATACCAA GGTGCTCAGC
AGCCCGAAGA TTATGGCGCT GAATAACCAA ACCGCCGTGC TAAAAGTGGT GGATAATACG
GTCTTCTTTA CGGTGGAGGC GGAAGCCGGT TCTTCGGCCA ATGCCAGTGG CGGCACCGAT
ACCACCGCCC TTATCAATAC CCGTGTGCAC ACCGTGCCGG TGGGTTTGGT GATGAGCGTT
ACCCCGCAAA TCAGCGCCGA TGATGTGGTC ACACTGAATG TGCGTCCCAC CATCTCCAGC
GTAAGCCGCT GGGTGTCGGA TCCCAACCCC CATTTGAACG CTGGCGTGGA AAACCTGATT
CCTGAGATCC AGGTTAAAGA GATGGAGTCG ATCCTGCGGG TGCATAGTGG TCAGATTACC
GTGATGGGTG GTTTGATGCA GGATAAAATC TCCAAGGTAG ATACAGGTTT GCCGCTGATT
TCCCAAGTTC CGGGCATTGG TGGGCTGTTT GGTTATAAAG AAAAGACCGT CTCTAAAACG
GAACTGGTGA TCTTCATGCG GCCCGTGGTG ATGACCCATG GTAAACCCCG TGGGGTGGCG
GTGGCCAACA GTGGTTCATC CACCAACACA GTGATCACCC CCCGTACCAT GGTGGCACCG
GATCCTGCGG CGCTGTCGGC GGCTGAGGCC CCTGTCATGC AGCCCCGTGA ACCCCAGGCC
AGCAGTGGTG GTTACTTAAA CTTTACCAAT GGTGGCCAAG CCAGCAGCTA TGCGGCCCCC
GCCGCGCCGG TATCCCCCAG TGTGGTGATG CCCCAAGCGG GCATGCGCAG CCCCTCCATG
ACGCCGCAAG CAGAGAACCC AAGCGCATGG AATGGTCAGC AGCAGGTCGT ACCCACCACT
TATACGGGGG GTAGTCAGCA GCAAGGTTAT GCCCAACCCA TGCAGCAGCA GGGTTACTAT
CAGCCTGTGC AGCAGCAGGG TTATGCCCAG CCTATGCAGC AGCAGGGTTA CTACCAGCCC
ATGCAGCAGC AGGGTTACGC CCAACCCATG CAGCAGCAGG GTTACGCCCA ACCCATGCAG
CAACAGGGTT ATGCCCAACC CATGCAGCAG CAGGGTTATG CCCAACCCAT GCAGCAGCAG
GGTTATGCCC AACCTATGCA GCAGCAGGGT TATGCCCAAC CTGTAGCGCC TGCCGCATAT
GGCATGTCTC AGGGTTACGC CAACCCCAAT GTGGCCTTGC AACCCTCGAC CATGGGCTAC
CCGGTCATGC CGAATGATCA ACAGATGGTG GCCGCGCCAG ATCCCTCCAT GATGGTGCAG
CCAGTGCCTG TGAGCCCCAC AGCTACCCAC TAA
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| Protein sequence | MNRQEKTMSR QMTIHKYAPC VSWKTGLVLG LVGLLSLSAC QTPSSITPSK QHFLRPTDPP
PGALTTALPP EAQDVVADTG QADMEEGDQI SITVNDTPAR TVLLALARDT KKNLDIHPGI
QGNVTISVVN QTLPRVLERI AKQVNMRYEI NGDTIQVYPD KAFLKIYQVD YVNIVRSSKT
TNKISTQLDT NSAMDPAMAG KEVPNQSDMT LTTDFKNDFW ASLTANITAI VSQGQASAPE
ALPAMANGSL PLPSAAPGGT ASPAKAEPKV TSSGVVSINQ ETGVISIFAT AADHERIGSY
LESLMENAHR QVLIESTVVE VTLSDDHQQG VDWASINDDG LSRLSAPFFA NSIGVNGGSR
PMALSDLPVF SLPTSINSGF GKITSTVRAL AKFGNTKVLS SPKIMALNNQ TAVLKVVDNT
VFFTVEAEAG SSANASGGTD TTALINTRVH TVPVGLVMSV TPQISADDVV TLNVRPTISS
VSRWVSDPNP HLNAGVENLI PEIQVKEMES ILRVHSGQIT VMGGLMQDKI SKVDTGLPLI
SQVPGIGGLF GYKEKTVSKT ELVIFMRPVV MTHGKPRGVA VANSGSSTNT VITPRTMVAP
DPAALSAAEA PVMQPREPQA SSGGYLNFTN GGQASSYAAP AAPVSPSVVM PQAGMRSPSM
TPQAENPSAW NGQQQVVPTT YTGGSQQQGY AQPMQQQGYY QPVQQQGYAQ PMQQQGYYQP
MQQQGYAQPM QQQGYAQPMQ QQGYAQPMQQ QGYAQPMQQQ GYAQPMQQQG YAQPVAPAAY
GMSQGYANPN VALQPSTMGY PVMPNDQQMV AAPDPSMMVQ PVPVSPTATH
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