| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2503 |
|---|
| Symbol | |
|---|
| ID | 4484173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3188866 |
|---|
| End bp | 3190569 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639723251 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_866409 |
|---|
| Protein GI | 117925792 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.153272 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGACTC GTATCACTGT CGATCCCATT ACCCGAATTG AAGGCCACCT GCGTATTGAT
GTGGAGGTGG ATAACGGGCG CGTGACCAAG GCGTGGTCTT CGGGCCAGAT GTGGCGCGGT
ATTGAAAAAA TTCTGGTGGG TCGTGACCCC CTGGAAGCGT GGACCTACAC CCAGCGTTTT
TGTGGGGTTT GCACCACGGT ACACGCCATT ACCTCGGTGC GTGCGGTGGA AAACGCGCTG
GGTATGGAGG TGCCGGTTAA TGCCCAGTTG ATCCGTAATA TTATCCAGAC CGCCCATGCG
ATCCAGGATC ATATTGTCCA CTTTTATCAC CTCTCGGCGG TGGATTGGGT GGATGTGGTC
TCTGCACTCA AAGCGGACCC CCGGGCGGCG GCGCAATTGG CAGAATCCCT CTCCGATTGG
TCCCTCAATG GTGTGCATGA GATGACGGCG GTGCAGAACC GTCTGAAAAA ATTTGTGGAG
AGCGGGCAGC TTGGCCCCTT TGCCACCGGC TTTTGGGGGC ATCCCGAGAT GAAGCTGCCG
CCAGAGGTTA ACCTAATGGC GGTAGCCCAC TACCTGCAAG CGTTGGAAGT ACAAAACTAT
TGCAATAAGA TCGTGGCGAT TCTTGGGGGT AAAAGTCCCC ATATTCAAAA TGTTGCCGTG
GGTGGGGTGT CAAACTCCAT CAGCCATGAT GCGCCTTCGG TGCTCAACAT GGAGCGCTTG
ATGTTTATTA AGGGCTTCAT GGATAAGTTG GAGAAGTTTA TCCATTCGGT CTACATGGTG
GATGTGCCAG CGGTGGGGGC CTTCTATCTG GATTGGACCA AGGTTGGTGG TGGTGTGATC
AACTATCTGT CGGTGCCCGA CTGCCCGCAG GATAGCAAGG GCACGATCTT TGACCTGCCT
GGTGGTTACA TTAAAGGGGG GGATCTCTCC ACCTTTAAAC CCATCAAAGC CCATGGGGAT
AAATATTTTC AAGAGGGTGT GGCCGAAAGC TCTAAACACG CATGGTACCA TGGGGACAAG
ACGCTGCATC CGTGGGAGGG CGAGACCGAG CCCAACTACA ACGACTTTAA CGAAGATGGC
CAATACTCCT GGATTAAAGC CCCCACCTTC TACGGCGAGC GGGCCGAGGT TGGACCGCTG
GCCAATGTGT TGGTGAGTGT GGCGGCGGGT CACGAGCCTG CCAAGCGCCA CCTGAACACG
GCCATCAACA CCCTCAAGAG CGTGGGTAGA TTGCAGGATG TGCCGTTGGA GGCTTTAAAC
TCCACCATTG GCCGCCATGC TGCTCGTGCG GTGCGCTGTG CGGTGATGAT GGATACCCTG
AAGGATCAGT GGCATGCCCT GGTAAACAAC ATTGGCACCG GTGATCTGGA GACCTTCAAT
CCCCCCACCA TGCCCAAGGG TGAGGTGCGT GGTTTTGGTT TCCATGAGGC GCCTCGTGGG
GCCTTATCCC ACTGGGTGGT GATTGAAAAG GGTAAGATTA AAAACTATCA GGCGGTGGTT
CCCTCTACCT GGAACGCCGG TCCCCGTGCT GAAAATGGCG ATCCTGGCCC TTATGAGATG
TCCTTGTTGG ATACCCCAGT GGCCGATCCT GAAAAGCCGT TGGAGGTGTT GCGTACGGTG
CACTCCTTTG ATCCTTGTAT CGCCTGTGCC ATTCATATGG TGGATACCGA AAAGCGTGAA
ATTGTAAAGG TTAAAGCGCT CTAA
|
|---|
| Protein sequence | MATRITVDPI TRIEGHLRID VEVDNGRVTK AWSSGQMWRG IEKILVGRDP LEAWTYTQRF
CGVCTTVHAI TSVRAVENAL GMEVPVNAQL IRNIIQTAHA IQDHIVHFYH LSAVDWVDVV
SALKADPRAA AQLAESLSDW SLNGVHEMTA VQNRLKKFVE SGQLGPFATG FWGHPEMKLP
PEVNLMAVAH YLQALEVQNY CNKIVAILGG KSPHIQNVAV GGVSNSISHD APSVLNMERL
MFIKGFMDKL EKFIHSVYMV DVPAVGAFYL DWTKVGGGVI NYLSVPDCPQ DSKGTIFDLP
GGYIKGGDLS TFKPIKAHGD KYFQEGVAES SKHAWYHGDK TLHPWEGETE PNYNDFNEDG
QYSWIKAPTF YGERAEVGPL ANVLVSVAAG HEPAKRHLNT AINTLKSVGR LQDVPLEALN
STIGRHAARA VRCAVMMDTL KDQWHALVNN IGTGDLETFN PPTMPKGEVR GFGFHEAPRG
ALSHWVVIEK GKIKNYQAVV PSTWNAGPRA ENGDPGPYEM SLLDTPVADP EKPLEVLRTV
HSFDPCIACA IHMVDTEKRE IVKVKAL
|
|---|
| |