| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1038 |
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| Symbol | |
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| ID | 4484046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1271037 |
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| End bp | 1272035 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639721786 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_864962 |
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| Protein GI | 117924345 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.716965 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGG CTAAAAGCCG CCGTAAAAAA CGTGTGGTCA GTTGCAGCAC AGGGAGCTGT
GCCACCAATA CGGGGGGTCC CAAACGGAGC AGCGGTGGGG CTGTACACAA AGGTAAGGGC
TCCACCACCG CCAAAAGCCG CAATGTTGCA CCCCGCGCGG CGGGCACGGT GCGGGCGGCG
GGCTCGCCGC GGGTGATTGG CGAAGCCCCA CGACTGCAAA AATGGTTGGC CGAGCAGGGG
CTCTGCTCCC GTCGTGAGGG CGAGGTGTGG ATTCAAGAGG GGCGGGTTTC CATCAATGGC
GAGGTGGTGA CGGAGCTGGG GGTTAAGGTT GCCAAGCGTG ACCGGGTAGC GGTGGATGGT
CAATTGGTGA CGCCTCAGCG TAGCCGCGAT ACCGCCATTA TTCTGCACAA ACCCAAGAGC
ATTATCTGCA CCCGCAGCGA TCCCCAGGGG CGTCGCACCA TCTTTGACCT TATTGAAAAT
CACGGCAGTA GCCGGTTGAT TACGGTGGGG CGTTTAGACA TCAACTCCGA AGGCTTGATC
ATTCTGACCA GTGACGGCCA ACTGGCCCAT GGCTTGATGC ACCCCTCGCG GGAGGTGCCA
CGCGTCTACC GAGTCAAGAC CCATGGTATT TTGTTGGCGT CGCAGTTGGA GCAGATCCGT
ACCGTCGGGG TGCGGCTGGA AGATGGCCCC ACCGGCCCCT TGGAGATCGT TTTGGACCGG
GGGCGGGAGC AGGGCAATAA CAGCTGGTAT ACCATCACCC TACGTGAAGG GCGTAACCGC
GAGGTGCGGC GCATCTTTGA CCATTTTGGG CTACAGGTGG CGCGTTTGCT GCGGGTGGGC
TATGGCGGCA TTTCATTGGG GAACTTGGAA CCCGGCGCGT GGCGTCCGGT GACGGTGGAT
GAGTGGAACA TGCTGCAAAA GATCTCTAAA CGGCCAATCC CAGGGGAGAG CGCTCAGGCG
ATTCCAGAGC GGGGGGGCGG CCAGGACGAT GAGGCATGA
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| Protein sequence | MSQAKSRRKK RVVSCSTGSC ATNTGGPKRS SGGAVHKGKG STTAKSRNVA PRAAGTVRAA
GSPRVIGEAP RLQKWLAEQG LCSRREGEVW IQEGRVSING EVVTELGVKV AKRDRVAVDG
QLVTPQRSRD TAIILHKPKS IICTRSDPQG RRTIFDLIEN HGSSRLITVG RLDINSEGLI
ILTSDGQLAH GLMHPSREVP RVYRVKTHGI LLASQLEQIR TVGVRLEDGP TGPLEIVLDR
GREQGNNSWY TITLREGRNR EVRRIFDHFG LQVARLLRVG YGGISLGNLE PGAWRPVTVD
EWNMLQKISK RPIPGESAQA IPERGGGQDD EA
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