Gene Sfum_1553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1553 
Symbol 
ID4461098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1915762 
End bp1916955 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content63% 
IMG OID639702320 
Productelongation factor Tu 
Protein accessionYP_845675 
Protein GI116748988 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0050] GTPases - translation elongation factors 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000482346 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAAGA AGAAATTTGA GCGGACGAAG CCGCATGTGA ACGTGGGCAC GGTGGGTCAC 
ATCGATCACG GCAAGACGAC GTTGACGGCG GCCATCACCA AGCAGTTGGC CAAGCGCGGC
CGGGCCGAAT TCGTGCCGTT CGATCAGATT GACAAGGCAC CCGAGGAGCG CGAGCGCGGC
ATCACCATCG CCACGGCGCA CGTGGAATAC GAGACGGACA AGCGGCATTA CGCTCACGTG
GACTGCCCGG GGCACGCGGA TTACATCAAG AACATGATCA CCGGAGCCGC TCAGATGGAC
GGAGCCATCC TGGTGGTGGC GGCCGACGAC GGTCCGATGC CGCAGACCCG CGAGCATATT
CTTCTGTCGC GTCAGGTGGG GGTTCCCTAC ATCGTGGTGT TTCTGAACAA GGTGGACATG
GTGGATGATC CGGAGCTGAT CGAGCTCGTG GAGCTGGAGT TGCGGGAGCT TCTGAGCAAG
TACGGTTTTC CGGGCGACGA CGTGCCCATC ATCAAGGGTT CGGCGTTGCG GGCGCTGGAG
GCCGACGATC CCGAGCATCC GGACACCAAG TGCATATTCG AGTTGATGGA AGCCATCGAC
GCGTATGTGC CGGACCCGGT GCGCGATATC GACAAGCCCT TTTTGATGCC CATCGAGGAT
GTGTTTTCGA TCAGCGGGCG CGGCACGGTG GTGACGGGGC GTGTGGAGCG CGGGGTCATC
CGGGTGAGCG AGGATGTGGA GATCGTGGGT TTCCGGCCGA CGTTCAAGAC GGTGTGCACG
GGTGTGGAGA TGTTCCGCAA GACCCTGGAC CAGGGGCAGG CGGGCGACAA CGTGGGGGTG
CTGCTGCGGG GCACCAAGCG CGACGAGGTG GAGCGCGGGC AGGTGGTGGC CAAGCCGGGG
AGCATCACGC CGCACACGAA GTTCAAGGCC GAGGTCTACG TGTTGAAAAA AGAGGAAGGC
GGGCGGCACA CGCCGTTTTT CCCGGGTTAC CGGCCGCAGT TTTATTTCCG CACCACCGAC
GTCACGGGGA TCATGACGCT GCCCGAGGGG GTGGAGATGG TCATGCCCGG AGACAACATC
AGCACCGAGG TCCACCTGAT CACGCCCGTG GCTCTGGAAA AGGAACTGCG CTTCGCCATC
CGTGAAGGCG GTCGCACCGT CGGCGCAGGC GTCATCACCG AGATCATCGA GTGA
 
Protein sequence
MGKKKFERTK PHVNVGTVGH IDHGKTTLTA AITKQLAKRG RAEFVPFDQI DKAPEERERG 
ITIATAHVEY ETDKRHYAHV DCPGHADYIK NMITGAAQMD GAILVVAADD GPMPQTREHI
LLSRQVGVPY IVVFLNKVDM VDDPELIELV ELELRELLSK YGFPGDDVPI IKGSALRALE
ADDPEHPDTK CIFELMEAID AYVPDPVRDI DKPFLMPIED VFSISGRGTV VTGRVERGVI
RVSEDVEIVG FRPTFKTVCT GVEMFRKTLD QGQAGDNVGV LLRGTKRDEV ERGQVVAKPG
SITPHTKFKA EVYVLKKEEG GRHTPFFPGY RPQFYFRTTD VTGIMTLPEG VEMVMPGDNI
STEVHLITPV ALEKELRFAI REGGRTVGAG VITEIIE