| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_1439 |
|---|
| Symbol | |
|---|
| ID | 4415908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Oenococcus oeni PSU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008528 |
|---|
| Strand | - |
|---|
| Start bp | 1351274 |
|---|
| End bp | 1353454 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639669613 |
|---|
| Product | exoribonuclease R |
|---|
| Protein accession | YP_810965 |
|---|
| Protein GI | 116491421 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCTA CTCAATTCGC TTCTGAAAAT TTTATTAACG GTACCTTTGT TGCTAATCCA
AAGGGATTCG GCTTTGTCAA AACTGATGAA GGCCAGGATG ACTTGTTCAT CGGTCACAGC
AATACCAATT TGGCCATGCA AAGCGATGAA GTTCTTGCTT CAATTATTCA CCCGGGCAAA
GATGGTCGGG TTCCGGAAGG AAAAATCGAA AAGATCCTTA GCCATGCCAA TCAAGAGGTA
GTTGGTATTT TTCGTTCCGG TGTTAACGAA AACGACTTGC CGAATAGAAG TAATTTAAAT
CCAAATGACT ACATCGGCAC GATCACCTTT AACGATGAAA AACTTCAGGA ATACAAATAC
CTCGTTGATA AAAAAGGTTT GCAGCCCCAG GACCGCGATT CGGTCACGGC GACAACCAGT
CAGTTTCCAA CCAGCGATCG TCCAAATCTG TTAATTGGAT CGGTTACTAA TGTTATCGGC
CGTTCGGATG CTCCGGGAGT TGATATTTTG GAGATTGTCT ACAGCTTGAA AATTCCCAGC
AACTATCCGG AAGATGCTGC CCAACAGGCA AAAAATATTC CACAAACGAT TGATGTAAAG
GCCGCTGAAG CAGAGGGACG ACCGGATTTT CGCGATCAGC CCTTAATTAC AATTGATGGA
GCCGACACGA AGGATATCGA TGATGCGGTA GTTGTCTGGA AACTGCCAAA CGGCAATTAT
CATCTAGGGG TTCATATTGC CGATGTTTCA AATTACGTGC CTTTGAAAAC GTCTTTGGAT
GCCGAAGCTT ATAAACGTGG AACCTCGGTT TATTTAACTG ACCGGGTTAT CCCAATGCTG
CCGACGGAAA TATCCAACGG GATTGCTTCT TTGAATCCTA ATGAAGATCG TTTGGCAATG
TCCTGTGAAA TGGAAATTAA TCAAGAAGGA CAAGTTGTCA AACATAAGAT ACAACCAAGC
ATTATTCGTT CGCATGCACG AATGACTTAT GATTCGATTA ATAAAATTCT AGACGGCGAT
CAGGCGGAAA CAGCTAAATA TGCTGATTTA TCGGAAATGA TCCATCAGAT GGGTGATTTG
CACAAAATTC TCGCGGCAAT GAGAAAAAAA CGTGGAGCAA TCGAGTTTGA AACCGATGAG
GCGGAAATTA TCGTCGATGC CAAAGGACAC CCGACTGATG TGTTGGTTCG CGATCGTGGA
ATTGGTGAAC GAATGATTGA ATCCTTTATG CTGGCTGCCA ACGAGACGGT TGCCGAGCAT
TTTGATCATT TGCACGTTCC TTTTTTGTAC CGTGTTCATG AAGTGCCGGA AGGTGATAAG
GTTGTTAATT TCTTCGAATT TATGCGGGCT ATCGGCCATC CGATCAAAGC CGATCCGAAA
AATCTGCGGC CAAAGGACTT TCAAGCAGCG CTGGATGCGG TTGCCGGGTT GCCGGAAGAA
ATGATGATCC AAACGATGAT GCTTAGAGCA ACCAAACAAG CTCATTATTC ACCGCAACCA
ATTGGACACT TTGGCATTGC TGCAAAATTT TACACTCATT TTACCTCGCC GATTCGTCGT
TATCCCGATC TGGTTGTTCA CCGTTTGATC AAACATTATG CCAAATTCGG GACTGGTCCT
TCTTCAACTG ACGCTGTGCG GGGAAAACTA CCGCAAATTG GGATCGATAC CTCTGAGCGG
GAACGTAGAG CTGTGGACGC CGAAAGAGCG ACTAACGATA TGAAATTTGC CGAATATATG
GAGGATCATA TCGGTGATAT TTATGACGGA GTTGTTAATT CAGCTTTGAA ATTCGGCCTT
TTCATCAGTT TACCGAACAC AATCGAAGGA CTTGCTCACA TAAGTACCAT GAAAGATGAT
ATTTATCAAT ATGATGAAAC CCGTCAAGCT TTGATCGGCC GGACCAAGCA CCGGATTTTC
GCGATTGGTC AGAAAGTTAA GGTACGGGTT ATCAATGCCA ATAAAGAAAC CCGCAAGATC
GATTTTGAGT TAATCGATCC GCAATCAGCG CCGGTAACCA AGATTCGTTT AGCTGCCGAA
CCGGAACGGC ACAGTTTCCA TCATGACCAT AATGGGGACC ACCATAATCA CCAGCATCAG
GAAAATCGGC AAAACAATCG TCATCAAAAG GGAGCTTATA AATCAACCGG CAAATATCGT
TTGCGTGGAG GACGTCGTTA A
|
|---|
| Protein sequence | MSATQFASEN FINGTFVANP KGFGFVKTDE GQDDLFIGHS NTNLAMQSDE VLASIIHPGK
DGRVPEGKIE KILSHANQEV VGIFRSGVNE NDLPNRSNLN PNDYIGTITF NDEKLQEYKY
LVDKKGLQPQ DRDSVTATTS QFPTSDRPNL LIGSVTNVIG RSDAPGVDIL EIVYSLKIPS
NYPEDAAQQA KNIPQTIDVK AAEAEGRPDF RDQPLITIDG ADTKDIDDAV VVWKLPNGNY
HLGVHIADVS NYVPLKTSLD AEAYKRGTSV YLTDRVIPML PTEISNGIAS LNPNEDRLAM
SCEMEINQEG QVVKHKIQPS IIRSHARMTY DSINKILDGD QAETAKYADL SEMIHQMGDL
HKILAAMRKK RGAIEFETDE AEIIVDAKGH PTDVLVRDRG IGERMIESFM LAANETVAEH
FDHLHVPFLY RVHEVPEGDK VVNFFEFMRA IGHPIKADPK NLRPKDFQAA LDAVAGLPEE
MMIQTMMLRA TKQAHYSPQP IGHFGIAAKF YTHFTSPIRR YPDLVVHRLI KHYAKFGTGP
SSTDAVRGKL PQIGIDTSER ERRAVDAERA TNDMKFAEYM EDHIGDIYDG VVNSALKFGL
FISLPNTIEG LAHISTMKDD IYQYDETRQA LIGRTKHRIF AIGQKVKVRV INANKETRKI
DFELIDPQSA PVTKIRLAAE PERHSFHHDH NGDHHNHQHQ ENRQNNRHQK GAYKSTGKYR
LRGGRR
|
|---|
| |