Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_68140 |
Symbol | |
ID | 4383474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 6080538 |
End bp | 6082067 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639328096 |
Product | drug efflux transporter |
Protein accession | YP_793631 |
Protein GI | 116053307 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0000279343 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.00567017 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCGAAA GCAGCAGCTT CTCCCCGCCC AGCCTGGTGA TGGCGACCAT CGGCCTGTCC CTGGCGACTT TCATGCAGGT GCTCGATACC ACCATCGCCA ACGTCGCCCT GCCGACCATC TCCGGTAACC TCGGGGTGAG TTCGGAACAG GGCACCTGGG TGATCACCTC GTTCGCCGTG AGCAACGCCA TCGCCCTGCC GCTGACCGGC TGGCTGGCCC GGCGGGTCGG CGAGGTGCGC CTGTTCATCG CCGCCGCGCT GCTGTTCGTA CTCGCCTCGT TCCTCTGCGG CATCGCCCAG TCGATGCCTT CTCTGGTCGG CTTCCGCGCC TTGCAGGGCT TCGTCGCCGG GCCGCTGTAT CCGATCACCC AGACCCTGCT GATCTCCATC TACCCACCGG CGAAGCGCGG CATGGCCCTG GCCCTGCTGG CGATGGTCAC GGTGGTGGCG CCGATCGCCG GGCCGATCCT CGGCGGCTGG ATCACCGACG ACTACAGCTG GCCGTGGATC TTCTTCATCA ACGTGCCGGT CGGCCTGTTC GCCGCTTTCG TCGTCTACCA GCAACTGAAG GCACGCCCGG TGGTGATCAA GAAGGCGCCG ATGGACTACG TCGGCCTGAT CGCCCTGGTG ATCGGCGTCG GCGCCCTGCA GATCGTCCTC GACAAGGGCA ACGACCTGGA CTGGTTCGAG TCGAACTTCA TCGTCGGCGG CGCGCTGATC GCGGCGATCG CCCTGGCCTT CTTCATCATC TGGGAATTCA CCGACCGCCA TCCGATCGTC AACCTGCGCC TGTTCGCCCA CCGCAACTTC GCCGCCGGCA CCCTGGCGCT GGTGCTGGGC TATGCCGCAT TCTTCGGCAT CAACCTGCTG CTCCCGCAAT GGCTACAGAC CCAGATGGGC TACACCGCCA CCTGGGCCGG GCTGGCCGCC GCGCCAATCG GCATCCTCCC GGTGTTCCTC TCGCCGCTGG TCGGCCGCTA CGCCAACCAT TTCGACCTGC GCATACTCGC CGGCCTGTCG TTCCTGGCGA TGGCCATCAC CTGCTTCATG CGCGCCAACT TCACCACCGA GGTCGACTAC CAGCACATCG CCATCGTGCA GTTGATCATG GGGCTCGGCG TGGCGTTCTT CTTCATGCCG ATCCTGAGCA TCCTGCTCTC CGACCTGCCC CCCGACCAGA TCGCCGACGG CTCCGGACTG GCCACCTTCC TGCGCACCCT CGGCGGCAGC TTCGCCGCCT CGCTGACCAC CTGGATCTGG AACCGCCGCG CCACCCAGCA CCACGCCTAC CTCAGCGAAA ACATCAGCCT CTACGACCCG GCCACCCACG AAACCCTCGC CCAGCTCGGC GGCAACACCC AGGCGAACGC GGCGCTGCTC GACCGGATGG TGCAGAGCCA GGCCTACATG ATGTCCACCA TCGACTACTT CACCATGCTC GGCTGGCTGT TCCTCGCCCT GCTGGTGATC ATCTGGCTGG CCCGCCCGCC GTTCGGCGCC AAGCCCGGCG CGGCCGCCTC CGGGCACTGA
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Protein sequence | MSESSSFSPP SLVMATIGLS LATFMQVLDT TIANVALPTI SGNLGVSSEQ GTWVITSFAV SNAIALPLTG WLARRVGEVR LFIAAALLFV LASFLCGIAQ SMPSLVGFRA LQGFVAGPLY PITQTLLISI YPPAKRGMAL ALLAMVTVVA PIAGPILGGW ITDDYSWPWI FFINVPVGLF AAFVVYQQLK ARPVVIKKAP MDYVGLIALV IGVGALQIVL DKGNDLDWFE SNFIVGGALI AAIALAFFII WEFTDRHPIV NLRLFAHRNF AAGTLALVLG YAAFFGINLL LPQWLQTQMG YTATWAGLAA APIGILPVFL SPLVGRYANH FDLRILAGLS FLAMAITCFM RANFTTEVDY QHIAIVQLIM GLGVAFFFMP ILSILLSDLP PDQIADGSGL ATFLRTLGGS FAASLTTWIW NRRATQHHAY LSENISLYDP ATHETLAQLG GNTQANAALL DRMVQSQAYM MSTIDYFTML GWLFLALLVI IWLARPPFGA KPGAAASGH
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