Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_51880 |
Symbol | oprD |
ID | 4380036 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 4606220 |
End bp | 4607551 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639326753 |
Product | basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor |
Protein accession | YP_792316 |
Protein GI | 116048883 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.286241 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.0103947 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAGTGA TGAAGTGGAG CGCCATTGCA CTGGCGGTTT CCGCAGGTAG CACTCAGTTC GCCGTGGCCG ACGCATTCGT CAGCGATCAA GCCGAAGCGA AGGGGTTCAT CGAAGACAGC AGCCTCGACC TGCTGCTCCG CAACTACTAT TTCAACCGTG ACGGCAAGAG CGGCAGCGGG GACCGCGTCG ACTGGACCCA AGGCTTCCTC ACCACCTATG AATCCGGCTT CACCCAAGGC ACCGTCGGCT TCGGCGTCGA TGCCTTCGGC TACCTCGGTC TGAAGCTCGA CGGCACCTCC GACAAGAGCG GTACCGGCAA CCTGCCAGTG ATGAACGACG GCACGCCCCG TGACGACTAC AGCCGCGCCG GTGGCGCCGT GAAGGTACGC ATCTCCAAGA CCATGTTGAA GTGGGGCGAG ATGCAGCCGA CCGCTCCGGT CTTCGCCGCC GGCGGCAGCC GCCTGTTCCC GCAGACCGCG ACCGGCTTCC AACTGCAGAG CAGCGAACTC GAAGGGCTCG ATCTCGAAGC GGGCCACTTC ACCGAAGGCA AGCAGGGCAC CACCACCAAG TCGCGCGGCG AACTCTACGC AACCTATGCA GGCGAGACCG CCAAGAGCGC CGATTTCATT GGGGGCCGCT ACGCAATCAC CGATAACCTC AGCGCCTCCC TGTACGGTGC TGAACTCGAA GACATCTATC GTCAGTATTA CCTGAACAGC AACTACACCA TCCCACTGGC ATCCGACCAA TCGCTGGGCT TCGATTTCAA CATCTACCGC ACAAACGATG AAGGCAAGGC CAAGGCCGGC GACATCAGCA ACACCACTTG GTCCCTGGCG GCAGCCTACA CTCTGGATGC GCACACTTTC ACCTTGGCCT ACCAGAAGGT CCATGGCGAT CAGCCGTTTG ATTATATCGG CTTCGGCGAG AACGGTTCCG GCGGCGGCGG TGACTCGATT TTCCTCGCCA ACTCCGTGCA GTACTCCGAC TTCAACGGCC CCGGCGAGAA ATCCTGGCAG GCCCGCTACG ACCTGAACCT CGCCTCCTAT GGCGTTCCCG GCCTGACTTT CATGGTCCGC TATATCAATG GCAAGGACAT CGATGGCACC AAGATGTCTG ACAACAACGT CGGCTATAAG AACTACGGCT ACGGCGAGGA CGGCAAGCAC CACGAGACCA ACCTCGAAGC CAAGTACGTG GTCCAGTCCG GTCCGGCCAA GGACCTGTCG TTCCGCATCC GCCAGGCCTG GCACCGCGCC AACGCCGACC AGGCCGAAGG CGACCAGAAC GAGTTCCGCC TGATCGTCGA CTATCCGCTG TCGATCCTGT AA
|
Protein sequence | MKVMKWSAIA LAVSAGSTQF AVADAFVSDQ AEAKGFIEDS SLDLLLRNYY FNRDGKSGSG DRVDWTQGFL TTYESGFTQG TVGFGVDAFG YLGLKLDGTS DKSGTGNLPV MNDGTPRDDY SRAGGAVKVR ISKTMLKWGE MQPTAPVFAA GGSRLFPQTA TGFQLQSSEL EGLDLEAGHF TEGKQGTTTK SRGELYATYA GETAKSADFI GGRYAITDNL SASLYGAELE DIYRQYYLNS NYTIPLASDQ SLGFDFNIYR TNDEGKAKAG DISNTTWSLA AAYTLDAHTF TLAYQKVHGD QPFDYIGFGE NGSGGGGDSI FLANSVQYSD FNGPGEKSWQ ARYDLNLASY GVPGLTFMVR YINGKDIDGT KMSDNNVGYK NYGYGEDGKH HETNLEAKYV VQSGPAKDLS FRIRQAWHRA NADQAEGDQN EFRLIVDYPL SIL
|
| |