| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5829 |
|---|
| Symbol | |
|---|
| ID | 4314735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 301898 |
|---|
| End bp | 302803 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638153670 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_777709 |
|---|
| Protein GI | 115360572 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.581333 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAT TCTCCGCGCT GCGCGCGTTC GTTGAAGTAG CGGAAGCCGG CGGCTTCTCC
AGCGCAGGGC GCCGCCTCGA TCTCGCCGCT TCGTCGGTGG TGCGTGCGGT GGACGCACTC
GAGGCATCGC TCGGCACCGT GCTGCTGAAC CGCACCACGC GACAGGTCAC GTTGTCCGAT
GCGGGCGCCG TCTACTATGC GCGGGCGAAG CAGCTGCTCG AGGCGCTCGC GGAAGCCGAT
GCGCTCGTCG CCGATCGCGG CGACGAACCG TCCGGACCGC TGCGGGTGTC CGTGCCGGTC
GCGTACGGCA TGCACCGCAT CGCACCGCAC GTCGGCGCAT TCCTCGCGCG CTATCCGAGG
CTCGATCTCG ATCTGCAACT CACCGACGCA CGCGTCGATC TCGTCACCAG CCGGATCGAC
GTCGCGATCC GGCTCGGCGA AGCCGCGCCG TCCGCGGAGG TCGTCGCGCG GCAGCTCGGC
ACGTTCCGGC GGTATGTCGT GGCGAGCCCC GACTATCTCG ACGCGCACGG CACGCCATCG
ACGCCGGGTG AGCTGGTCGA TCATGGCTGC CTGCGCTTTC ACTTCGGTGG CGATCAGCAG
GCGTGGTCGT TCGTCGATGC GCGCGGCGCG ACGAAGGTGC TCGTCACCGG GCGACTGAAA
TCGAACCACA GCGAAGTGTT GCGCGCCGCC GCGCTCGATG GCGGCGGCAT CGCGCTGCTG
CCCGACTGGC TGGTCGATGC CGACGTCCGG GCGGGCCGCC TGCGCAGGTT GTTCGAACAG
TACGACGTCG TGCCCGACGC GGCACGCTCG ATCGTCACCG CGCTCTACCT GCCGAATCAG
CGCGGCTCGA AGCGCGTCAC CGCGTTCATC GATTTTGTCG AGGCGCAGGC TCGCACGCCG
TGCTGA
|
|---|
| Protein sequence | MDKFSALRAF VEVAEAGGFS SAGRRLDLAA SSVVRAVDAL EASLGTVLLN RTTRQVTLSD
AGAVYYARAK QLLEALAEAD ALVADRGDEP SGPLRVSVPV AYGMHRIAPH VGAFLARYPR
LDLDLQLTDA RVDLVTSRID VAIRLGEAAP SAEVVARQLG TFRRYVVASP DYLDAHGTPS
TPGELVDHGC LRFHFGGDQQ AWSFVDARGA TKVLVTGRLK SNHSEVLRAA ALDGGGIALL
PDWLVDADVR AGRLRRLFEQ YDVVPDAARS IVTALYLPNQ RGSKRVTAFI DFVEAQARTP
C
|
|---|
| |