| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5610 |
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| Symbol | |
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| ID | 4314605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 44306 |
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| End bp | 47104 |
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| Gene Length | 2799 bp |
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| Protein Length | 932 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638153452 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_777491 |
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| Protein GI | 115360354 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.706105 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCA AGCTCGATCC GTATCGGCGC AAGCGCCACT TCGGCGCGAC GCCGGAACCC
GAAGGCGCGC ACGGGCATCA TGCGAAGGCC GGTGCGAAGC CCGCCGCGCG CGCGAGCGCA
CGGGGCACTC ACCCGCTGCG CTTCGTGATC CAGGAGCACC ACGCGCGGCG ACTGCACTAC
GACTTTCGGC TCGAACTCGA TGGCACGCTG AAGTCGTGGG CCGTGCCGAA GGGGCCGAGC
TTCGATCCGT CGGTGAAGCG CCTCGCGGTG CACGTCGAGG ACCATCCGCT CGAATACGCG
TCGTTCGAAG GCCAGATTCC GGAGGGCCAT TACGGCGCGG GCTCGGTCGT CGTATGGGAC
GAAGGCACGT GGACGCCCGA TGGCGGGGTT GCGCAGGCAC GCGAAGGCTA TCGCGCGGGC
AAGCTGACGT TCCGGCTCGA TGGCGAAAAG CTGCACGGCG GCTGGGCGCT CGTGCGCAGC
GGGCGGCAGG AGGGGCGGCA GGAGCAGTGG CTGCTGATCA AGGAGCGCGA CGACGACGCG
CGCAGCATGG ACGAATTCGA CGTCGTCGGC GAGCGGCCGG GCAGTGTGCA CGACGGCGCG
GCGTCGGCGC GGGCGGACGC GAAGAACGGC TCGGCGCGCG GGTCGCGAAG CGGGCAGCGC
GAGAAGTCCG GCACATCCGC GGCGCGGCAT GACGACCACC GGCACGACGG CCACGCCGGC
ACGCCCATCG ACCCTTCCCG GATCGAAGGC GCGGTGCGCG CGCCGCTGCC CGAGCACGTC
GCGCCGCAAC TCGCGACGCT GGTCGACGGT CCGCCGACGC AGGGCGACTG GTGCTATGAA
CTGAAGTTCG ACGGCTACCG GATCCTTGCG CGCATTTCCG GCAAGGGCGC GCGCCGGCAT
GTGAAGCTGA TGACGCGCGA AGGCCGCGAC TGGACCGCGA AGCTGCGCGC GCAACGCGAT
GCGCTCGCGG CGCTCGACGT CGACGCCGCG TGGCTCGACG GCGAGGCCGT CGTGCTCGGC
AAGAACGGCC TGCCCGATTT CCAGGCGTTG CAGAACGCAT TCGGCGGCGG GCATTCGGAC
GAGATCACGC TGTTCGTGTT CGACCTGCCT TATCTCGACG GTTACGACCT GCGCGACGCG
CCGCTCACCG CGCGCCGCGC GTTGCTCGAA CCCTTGTTCG CCGACAGCGA CCCCACGCGG
CTGCGCTTTT CGCCCGATCT CGGCAACGAC GTCGCATCGC TGATCGCGAG CGCATGCGAC
ACCGGCCTCG AAGGGCTGAT CGGCAAGCGC GCCGAGTCGC GCTATCGCGC CGGACGCTCG
CCCGCGTGGA TCAAGCTCAA GTGCCGGCGC CGGCAGGAGT TCGTGATCGG CGGCTATACC
GAGCCGTCGG GCAGCCGGCA CGGCTTCGGC GCGCTGCTGC TCGGCGTGCA CGAACCGGCC
GCGGACGGCA AGCGGCGGCG CGGGCCGGGG CCGTTGCGCT ACGTCGGCCG CGTCGGCACC
GGCTTCGACA CGCGGATGCT CGACCGGCTT ACCCCCATCC TGCGCAAGCA CGAACGCGAC
ACGATGCCGT TCGATCCGCC GCCGCGCGAA CGCTCGCGCA CGCCCGTGCA CTGGATCGAG
CCGGTGCTCG TCGCCGAATG CGAATTCGCG GAATGGACCG GCGACGGCAT CGTGCGGCAG
GCCGCGTTCA TCGCGCTGCG CGAGGACAAG CCGGCGGCAC GGATCGTCCG CGAGGTGCCG
AAGCATACGG AAACGGAGGT GCAGATGGAA CAGCGTCAAA CCACGCGGCA CGAAAGGCAC
AAACCCAAGG GCGCGGCGCG CGCGGAGCGC GACACGAGCG ACGCAAGCGA TGGCAAACAC
CCCGCACGTT CCCGCGGCTC CCGTCGCGCC GAGGCCGACG ATACCGGCCC CGACCAGCTC
GGCCGCGTGC GCATCAGCCA TCCGGAGCGC GTGATCGACT CGCACAGCGG CACGCGCAAG
ATCGATCTCG CGCGCTACTG GCAATGGGTC GCGCCGTGGC TGCTGCGGGA CCTGAAGGGT
CGCCCTGTGT CGCTCGTGCG CGCACCGGGC GACATCTCGG GCGAGCTGTT CTTCCAGAAG
CACGCGGAGC GCCGCGAGAT CCCGTTCGTC ACGCAACACG AAGGGCTCGA TCCGGGCCAT
GGCCCGCTGC TGTCGCTCGA CAGCGTCGAT GCGCTGCTCG GTGCCGCGCA AATGGGCACG
ATCGAGCTGC ATACGTGGAA TGCGCACGCG TCGAACATCG AGCGGCCCGA CCGGATCGTG
TTCGACCTCG ATCCCGATCC GGCGCTGCCG TGGAGCGCGA TGATCGACGC CGCGCAGCTC
GTGCGCGGGC TGCTCGACGA ACTCGGCCTC ATCTCGTTCT GCAAGACGAG CGGCGGCAAG
GGGCTGCACG TCGTCGTGCC GATCACGCGG CACATGGGAT GGGACGAAGT GAAGGATTTC
TCGCGCGCGG TCGCGCAGCA TGTCGCGGGT GCGTTGCCCG ATCGCTTCAC CGCGACGATG
GGCCCGAAGC ACCGGCGCGG CAAGATCTTC ATCGACTACC TGCGCAACGG CCGCGGCGCG
AGCACGATCG CCGCGTATTC GGTGCGCGCG CGGCCCGGGC TCGGCGTGTC GGTGCCGCTG
CGCTGGGACG AGGTGCCCGA CACGACGGGC GGCGCGCAAT GGACGATCGA CACGCTGCAC
GAGCGCCTCG ATCGACTGAA GCGCGATCCG TGGGACGGCT ATGACGACAC GCGCCAGCGA
ATCACCGCAC AAATGCGCGC GCGGCTCGGC ACGTCGTGA
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| Protein sequence | MAGKLDPYRR KRHFGATPEP EGAHGHHAKA GAKPAARASA RGTHPLRFVI QEHHARRLHY
DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA SFEGQIPEGH YGAGSVVVWD
EGTWTPDGGV AQAREGYRAG KLTFRLDGEK LHGGWALVRS GRQEGRQEQW LLIKERDDDA
RSMDEFDVVG ERPGSVHDGA ASARADAKNG SARGSRSGQR EKSGTSAARH DDHRHDGHAG
TPIDPSRIEG AVRAPLPEHV APQLATLVDG PPTQGDWCYE LKFDGYRILA RISGKGARRH
VKLMTREGRD WTAKLRAQRD ALAALDVDAA WLDGEAVVLG KNGLPDFQAL QNAFGGGHSD
EITLFVFDLP YLDGYDLRDA PLTARRALLE PLFADSDPTR LRFSPDLGND VASLIASACD
TGLEGLIGKR AESRYRAGRS PAWIKLKCRR RQEFVIGGYT EPSGSRHGFG ALLLGVHEPA
ADGKRRRGPG PLRYVGRVGT GFDTRMLDRL TPILRKHERD TMPFDPPPRE RSRTPVHWIE
PVLVAECEFA EWTGDGIVRQ AAFIALREDK PAARIVREVP KHTETEVQME QRQTTRHERH
KPKGAARAER DTSDASDGKH PARSRGSRRA EADDTGPDQL GRVRISHPER VIDSHSGTRK
IDLARYWQWV APWLLRDLKG RPVSLVRAPG DISGELFFQK HAERREIPFV TQHEGLDPGH
GPLLSLDSVD ALLGAAQMGT IELHTWNAHA SNIERPDRIV FDLDPDPALP WSAMIDAAQL
VRGLLDELGL ISFCKTSGGK GLHVVVPITR HMGWDEVKDF SRAVAQHVAG ALPDRFTATM
GPKHRRGKIF IDYLRNGRGA STIAAYSVRA RPGLGVSVPL RWDEVPDTTG GAQWTIDTLH
ERLDRLKRDP WDGYDDTRQR ITAQMRARLG TS
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