| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3854 |
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| Symbol | |
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| ID | 4312750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 741191 |
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| End bp | 742741 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638151696 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_775742 |
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| Protein GI | 115358604 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.353141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.927825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGTCA AGGCGCGCCT CCTGAACGCC GTTCTCGCCA CTCCCCCCAG CGGCAATCAC
CGCGTGACGG CCGCACTGCG TCCGTCGATG CTCGGCACGC TGTTCGAGGA CGTTCGCCCG
ATGGCGCTGT CCGGCGTCGC CAGCGCGTTC GTCGCGGCGA TCGCGCTGAT CCGTCTGCAG
CAACTCTGGT GTTTCGTGTG GCTCGTCGTC GACGTCGGCC TGCTCGCCGC GCGGCTCGCG
ATCGCACGCG CGTATGCGGT ACGCCGTGCC GCCGGCGACG ATCGCGCCGA ATACTTCGCG
CGGCACTATG CGCCCGTGTC GCTCGCCGCA TGCTTGTTGC TCGGTCTCGG CGTGATGGGC
TGCGTGGATG CGTCCGATGC CGAGCTCGGC ACGCTGTCGG TGATGGTCGC CGGCGGCGTG
TTCGGCGGGA TCGCGTCGCG CAATTCGGCG CTGCCGCGGC TCGCGATGAC GCAGGTCACG
CTCGGCGTGC TGCCGATCGG CGTCGGCGCG CTGCTGGCCC GCCGGCCCGA CGCGTGGCTG
CTGGTGCCGC CGCTCGTGAT CTATCTCGCG GCGATGCGCA CGGTCGTGCA GCGCCATTAC
CGCGTGCTGG TCGCGTTGAT CGCCGCGCGC CAGCGCAACG CCGAGCTCGT CGCGCGCTTC
GATGCCGCAC TCACCTACAT GCCGCACGGC CTCTGCATGA TCGACGGCGA GAGCCGCGTG
ATCGTCGCGA ACCGGCGCAC CGCGCAGCTG TTCGGCTCGC CGCGCGAGAT CATGCTGGAC
ACCCCGCTGC CCGACGTGAT CGCGGCGCTC GGCGCGAACG CGGTGACCGA TTCCGGCGAT
GCGGGCCTCG CCGCGCAATG CTCGGTATGG TTGAACCGCG ACGAACCCGT GCCGCTCGAC
ATCGCGCTCG CCGACGGTCG CCAGCTCGAA CTGACGCGCC ATCGCGTCCC GGACGGCAAC
GCGGTGGTCA TCGTCGAGGA CGTCACCACG CGCCGGCGCG CCGAGCAGCA CATTCGGCAC
CTCGCGCGGC ACGACGCGCT GACCGGCTTG CCCAACCGCC ACGAACTGCA CGCGGAGCTC
AGGCGCAGGC TCGCGCACCG GCCGCGCATG CCGAGCCCCG CGCTCGCCGT CATGTATCTC
GACCTCGACG GCTTCAAGGC GATCAACGAC CGGTTCGGCC ACCAGGCTGG CGACGAGGTG
CTCACGCAAG TTGCCGAGCG GCTCGGCAAG ACGCTGCCGC CCGGCGAGCT GGCGGCTCGC
ATCGGCGGCG ACGAGTTCGT CGTCGCGATC GACGACACGA CGATGCAGGC GTGCTCGATC
CTCGCCGCGC GCATCATCCG GCAGATTTCG GCTCCGTACA CGCTGTCGAT CGGCGCGACC
GTCAGCCTCG GGATCAGCAT CGGCATCGCG CTCGACGACG GACACGGCTC GCCCGACGAA
CTGATCCGGC AGGCCGACAG CGCGCTATAC GACGCGAAGT CGGGCGGCAA GGGGATCTAC
CGCTTCTATT CGGCGGGAAG CCGCCGCGTG GCGCCCGCGA CCGCGAACTG A
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| Protein sequence | MAVKARLLNA VLATPPSGNH RVTAALRPSM LGTLFEDVRP MALSGVASAF VAAIALIRLQ
QLWCFVWLVV DVGLLAARLA IARAYAVRRA AGDDRAEYFA RHYAPVSLAA CLLLGLGVMG
CVDASDAELG TLSVMVAGGV FGGIASRNSA LPRLAMTQVT LGVLPIGVGA LLARRPDAWL
LVPPLVIYLA AMRTVVQRHY RVLVALIAAR QRNAELVARF DAALTYMPHG LCMIDGESRV
IVANRRTAQL FGSPREIMLD TPLPDVIAAL GANAVTDSGD AGLAAQCSVW LNRDEPVPLD
IALADGRQLE LTRHRVPDGN AVVIVEDVTT RRRAEQHIRH LARHDALTGL PNRHELHAEL
RRRLAHRPRM PSPALAVMYL DLDGFKAIND RFGHQAGDEV LTQVAERLGK TLPPGELAAR
IGGDEFVVAI DDTTMQACSI LAARIIRQIS APYTLSIGAT VSLGISIGIA LDDGHGSPDE
LIRQADSALY DAKSGGKGIY RFYSAGSRRV APATAN
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