| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2920 |
|---|
| Symbol | |
|---|
| ID | 4310664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 3218634 |
|---|
| End bp | 3220127 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638150760 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_774810 |
|---|
| Protein GI | 115352971 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0617737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAC TTCTGATGTC CCTGCTGATG GCAGGCTCGC TGATCGCGGC CGGTGTCGGC
CCCGCGCTCG CGGACGACGC GGCCTCGGCC GCGGCTGCGT CCGCGCCCGC CGCAATGGCG
TCCGATGCAA CGGCAGCCGC TTCGGCCGCC ACCGAGGCAT CGGCGCCTGC CGCTGCTGCC
GCCCCCGCGT CGGCCGCCGA CGCATCGGCT GCCGCGGCTG CGTCCGCGCC GGCCGCACCC
GCCGCGCCGA CCGCGCCGTT CTCCGTCGAT TCGTCGAAGA TCAGCGCCGG CGACACCGCG
TGGATGCTGA CGTCCACCGC GCTCGTGCTG TTCATGACGA TCCCCGGCCT CGCGCTGTTC
TACGCGGGCA TGGTCCGCAA GAAGAACGTG CTCGCGACCG TGATGCAGAG CTTCGCGATC
ACCGCGCTGA TCACGGTGCT GTGGACGGTG GTCGGCTACA GCCTCGCGTT CACGCCGGGC
AACGGCTTCA TCGGCGGCCT GTCGCGCGTG TTCCTGCACG GGATGACCTA CGTGAAGGGC
GACAAGGCGA CCACGCTGAC CGTCAGCCAC CTGGCGACGA CGATTCCGGA ATCGGTCTAC
TTCGTCTACC AGATGACGTT CGCGATCATC ACGCCGGCGC TGATCTGCGG CGCGTTCGCC
GACCGGATGA AGTTCTCGGC GATGCTCGTG TTCATGACGC TCTGGTCGCT GATCGTCTAC
GTGCCGATCG CGCACATGGT GTGGGAGCCG ACCGGCTGGC TGTCGGCGGA CGGCGTGCTC
GACTTCGCGG GCGGCACGGT GGTGCACATC AACGCCGGTA TCGCGGGCCT CGTGTCGTGC
CTGATGCTCG GCAAGCGCGT CGGCTTCGGC CGTGAATCGA TGGCGCCGCA CAACCTCGTG
CTGACGATGA TCGGCGGCTC GATGCTGTGG GTCGGCTGGT TCGGCTTCAA CGCGGGTTCG
GCAGTTGCGG CCGATGGCCG TGCCGGCTTC GCGATGCTGA CGACGCAAAT CGCGACGGCC
TGCGCGGCGC TCGGCTGGAT GTTCGCCGAG TGGCTCACGC ACGGCAAGCC GTCGGTGCTC
GGCATCGTGT CGGGCGCGGT CGCGGGTCTC GTCGCGATCA CGCCGGCGGC CGGCTTCGTC
GGTGTACCGG GTGCGCTCGT GATCGGCATC GCCGCCGGCG TCGTGTGCTA CTGGTCGGCG
ACGTGGCTCA AGTCGAAGCT CGGCTACGAC GATTCGCTCG ACGCGTTCGG CGTGCACGGC
GTGGGCGGGG TGCTCGGCGC ACTGCTGACC GGCGTGTTCG CGGTGAAGGA CATCGGCGGT
TTCGACGGCA GCCTGCTGCT GCAGGCGAAG GGCGTGCTGA TCACGCTGGT GTACAGCGGC
GTGCTGAGCT TCGTGCTGCT GAAACTGATC GACCTGACGA TCGGCCTGCG CGTGAGCGAA
GAGGAAGAGC GCGAAGGCCT CGACGTGGTG CTGCACGGCG AGCACGTCGA ATAA
|
|---|
| Protein sequence | MRKLLMSLLM AGSLIAAGVG PALADDAASA AAASAPAAMA SDATAAASAA TEASAPAAAA
APASAADASA AAAASAPAAP AAPTAPFSVD SSKISAGDTA WMLTSTALVL FMTIPGLALF
YAGMVRKKNV LATVMQSFAI TALITVLWTV VGYSLAFTPG NGFIGGLSRV FLHGMTYVKG
DKATTLTVSH LATTIPESVY FVYQMTFAII TPALICGAFA DRMKFSAMLV FMTLWSLIVY
VPIAHMVWEP TGWLSADGVL DFAGGTVVHI NAGIAGLVSC LMLGKRVGFG RESMAPHNLV
LTMIGGSMLW VGWFGFNAGS AVAADGRAGF AMLTTQIATA CAALGWMFAE WLTHGKPSVL
GIVSGAVAGL VAITPAAGFV GVPGALVIGI AAGVVCYWSA TWLKSKLGYD DSLDAFGVHG
VGGVLGALLT GVFAVKDIGG FDGSLLLQAK GVLITLVYSG VLSFVLLKLI DLTIGLRVSE
EEEREGLDVV LHGEHVE
|
|---|
| |