| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1288 |
|---|
| Symbol | |
|---|
| ID | 4311686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1410611 |
|---|
| End bp | 1412362 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638149097 |
|---|
| Product | polypeptide-transport-associated domain-containing protein |
|---|
| Protein accession | YP_773180 |
|---|
| Protein GI | 115351341 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0488096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTGTCG TTAGGAAGCT GGCTCATGTC CGGTGCTGGA ACCGTTGCCG ATCGTGTGCC
GATCGGTGTC CTTGTCATGG CGCCCACGGC ACCCACGGCG CCGCGCCGCT GCGGCGCCGC
GCACCGTTCG GCGTCGCGCT GGCGGTGAGT GTCGGCGCCG TGCTGTTCGC CGCGCACGCG
CACGCACAAG TGCCGAACGC CGGGCAGGCG ATGCGCGATA TCGAAACGCC GCGCCCGACC
CTTCCTTCCA CCGCCGCACC CGCCCTCGAC ATCCCGAAGT CCGATGACGC GCAGGCGCCT
CTCCCCGATA CCGGCCCACG CGTGCACGTG CGGGCGTTCA CGCTCGACGG CAACCGCGTG
TTCGACAGCG GCACGCTGCT GCCGCTCGTC GCCGATCTTG CCGGGCGCGA CCTGAGCTTC
GCCGAGCTGC AGCAGGCGGC CGCCCGAATC ACGACCTACT ACCGCGAGCG CGGCTATGTG
CTCGCGCGTG CCTATCTGCC GCACCAGGAA ATCGACGACG GCGTCGTGCG CATCGACGTG
GTCGAAGGTC GCTACGGCAA GATCGAGCTG AACAACCGCT CGCGCGTGCT CGATGTCGCG
GTGCGGCAGC CGCTGGCCGG CATCCGCCCG GACGGCGTCG TGCGCGGCGG CGACCTCGAG
CGCAGCCTCG TGCTGCTGGA CGATCTCGCC GGCGTCTCGG CACGCGGCAC GCTGCGCCCC
GGCGACGCGG CGGGCACGAC CGATCTCGTC GTCGATGTCG ACAAGGGGCC ATTCGCAACC
GGGTCGCTCG AGTTCGACAA CTACGGCGAT GCCTCCACCG GCCGGTATCG GCTCGGCGGC
AGCGTCAACG TCAATTCGCC GTTGCGGCTC GGCGATCAGT TGAGCCTGCG CGGCCTCGTC
AGCAACGAGT GGCAGCGCTA CTACCGTGCC GGCTACCAGG TTCCGGTGGG CCCGCTGTCG
ACTCGGCTCG GCGTCGCGTA TTCGGAAATG CACTACCGGC TTGCCGGCGA GTTCTCGGAT
CTCGAATACC ACGGCCGCGC GAGCGTGCAG AGCGTGTTCG TCGCGCAGCC GCTCGTGCGC
GCCCGGCAGA TGGACCTCAC CGCGCAGATC CAGTACGAAA ACAAGAATCT GCACGACACC
TACGGCATCT TCGATCTCCA GACGGACAAG AACGTCGGCC TGTGGAGCTT CAGCCTGAGC
GGCAGCAGTG AGGACCGCTG GTTCGGCGGC GGCCGCAACG GCGTGTCGGT GACGTTCGGC
GCCGGCCGGC TGCGCAGCAA CGATCCGATC GGCATGAATA CCCTCGCGAA GACGATCGGC
TCGTTCTCGA AGCTGAACGT CAGCGCGCTG CGCGTCCAGT CGCTCGGTCG GCGCTTCCAG
TTCTATGCAC AGTTCAACGC GCAGCTCGCG TCGCGCAACC TCGATTCGTC CGAGAAATTC
AGCCTGGGCG GCCCGTACGG CGTGCGTGCA TACGGGTTCA GCGCCGGCAG CGGCGACCAG
GGCTGGCAGG CGAGCGCGGA GCTGCGCTAT CGCGCCGCGC CGGGGCTGCA GCTCAGCACG
TTCATCGACA CGGGGCGGGT GCAGCTCAAC GGTCACGCTG GCCGCGGCAT GGGCACTCGG
TTCACCGTTC GCTTCGCCGA CGCGTGCGCC GAGCGTCTGG GTTCAGGCCG CTCAGTATTT
CTGAGCGAAT TCTGTAGTAC CACCCTCGGC AACGGGGACA TAGTGATAAA ACAAATGAGG
ATTCCAAAAT GA
|
|---|
| Protein sequence | MCVVRKLAHV RCWNRCRSCA DRCPCHGAHG THGAAPLRRR APFGVALAVS VGAVLFAAHA
HAQVPNAGQA MRDIETPRPT LPSTAAPALD IPKSDDAQAP LPDTGPRVHV RAFTLDGNRV
FDSGTLLPLV ADLAGRDLSF AELQQAAARI TTYYRERGYV LARAYLPHQE IDDGVVRIDV
VEGRYGKIEL NNRSRVLDVA VRQPLAGIRP DGVVRGGDLE RSLVLLDDLA GVSARGTLRP
GDAAGTTDLV VDVDKGPFAT GSLEFDNYGD ASTGRYRLGG SVNVNSPLRL GDQLSLRGLV
SNEWQRYYRA GYQVPVGPLS TRLGVAYSEM HYRLAGEFSD LEYHGRASVQ SVFVAQPLVR
ARQMDLTAQI QYENKNLHDT YGIFDLQTDK NVGLWSFSLS GSSEDRWFGG GRNGVSVTFG
AGRLRSNDPI GMNTLAKTIG SFSKLNVSAL RVQSLGRRFQ FYAQFNAQLA SRNLDSSEKF
SLGGPYGVRA YGFSAGSGDQ GWQASAELRY RAAPGLQLST FIDTGRVQLN GHAGRGMGTR
FTVRFADACA ERLGSGRSVF LSEFCSTTLG NGDIVIKQMR IPK
|
|---|
| |