Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3992 |
Symbol | |
ID | 4280883 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4761018 |
End bp | 4761608 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638136813 |
Product | NLP/P60 protein |
Protein accession | YP_752656 |
Protein GI | 114565142 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00000856339 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTTTTC GGGGTTTGGA GTGGGTTGAA TTGGCTAAAA GATTATTGTT TAGTTGTTTA GTGCTGTTGT TGTCTGCGTG TGCGTCTTCT CCTGTTGTGG TTGTCGCACC TAAGCCCGTG GTGGTTCCTC CCATGCTTAA GCCAGAACCT CCCAAGTGGA GTGAGTCAAA CCTATTGAGT TTTCATAACC AATGGAAAGG CACTCCATAT CGTTTAGGTG GCCTGAGTAG AAATGGCGTA GATTGTTCAG GGTTTGTGTA TTTAGCCTAC CTGAATATTG TTGGCGACAA GTTGCCTCGT ACTGTGAACT CTCAACGTAT TTTAGGCAAA GAAGTACCGC GTAATCAGTT ACAGACTGGC GATTTAGTTT TTTTTAAAAC CAATCGAACC GTTCGTCATG TCGGTATTTA CATGGGCAAT GACCGATTTT TACATGCCTC GACTAAAAAA GGGGTAAAAA TTTCGAGTTT AAATAATATC TATTGGAAGC CTCGTTTTTG GTTTGCAAAA CGCTTAAAAA AACCAACAGT TGAACAAAAT ATGTCGATCG CCAGCTTGGT TGAGCATGTT CAGCAGCAAG ACGATTTATA A
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Protein sequence | MIFRGLEWVE LAKRLLFSCL VLLLSACASS PVVVVAPKPV VVPPMLKPEP PKWSESNLLS FHNQWKGTPY RLGGLSRNGV DCSGFVYLAY LNIVGDKLPR TVNSQRILGK EVPRNQLQTG DLVFFKTNRT VRHVGIYMGN DRFLHASTKK GVKISSLNNI YWKPRFWFAK RLKKPTVEQN MSIASLVEHV QQQDDL
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