Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3937 |
Symbol | |
ID | 4280828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4697558 |
End bp | 4698220 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638136758 |
Product | transcriptional regulator, TetR family protein |
Protein accession | YP_752601 |
Protein GI | 114565087 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.353211 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACCC GCGATAAAAT CATTTTTGCC AGCTTAGAAC TATTCAATGA ACACGGTGAG CGTAGCATTA CCACCAACCA TATTGCAGCG CATTTAGGCA TTAGTCCGGG CAATTTGTAC TATCACTTCC GCAATAAAGA AGACATCATC AATTCAATTT TCAGTCTATA TGAAAGTCAT TTAGAGTCAG GCTTTAAGCC TTATGATGAT GTGCCTATTA CGATTGAATT ATTAATGGGT TATTTTGACG CCATGTTCTA TACCTTATGG CAGTTTAGGT TTATGTATGC CAACTTAGCC GATATTTTAA GCCGTGATGA TGCGCTAAAG AAACGCTACT TACATGCTCA ACAACAAGTA CTGACTCGCT CAAGCGATGT ACTGCGCAAA CTCAAAAAAG ACGGTTTCCT AGACGTCGAT GATAATAAAG TAACCGCGCT TGCCGACACC ATTAAAATGA TGGTCAGTTT CTGGATTAGC TACCAATTAA CTCAATCTAG TACATCAACC ATCACTAAAG CCACGCTATA CGATGGGTTA TTAAGAGTAT TGATGATTTT TCAGGCTTAC TCGACTCCCA CTTCAACCGC AACATTTTGT CGTTTAGAGC AACACTACTT AGACATAGCC AGCCAAGAAC GCCATAGCAT CGCACAAATA TAA
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Protein sequence | MKTRDKIIFA SLELFNEHGE RSITTNHIAA HLGISPGNLY YHFRNKEDII NSIFSLYESH LESGFKPYDD VPITIELLMG YFDAMFYTLW QFRFMYANLA DILSRDDALK KRYLHAQQQV LTRSSDVLRK LKKDGFLDVD DNKVTALADT IKMMVSFWIS YQLTQSSTST ITKATLYDGL LRVLMIFQAY STPTSTATFC RLEQHYLDIA SQERHSIAQI
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