| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3596 |
|---|
| Symbol | |
|---|
| ID | 4280489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4269258 |
|---|
| End bp | 4271021 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638136408 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_752262 |
|---|
| Protein GI | 114564748 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000163132 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGT TTGTAACTCG TCGTGACTTT TTGGCTATGT CAGCTAAAGG TGCTGGGGCA
GTAGTGGTGT CTTATGGATT AATGGGCTGT AGCAGTGATG ATGACGATGT CGTATCGGGT
CAGTTTTTGC AAGGGATTGC CAGTGGCGAC CCAGCTGCAG ATGCGGTGAT TTTATGGACT
CGGGTTACGC CTGATGTGGA AGGTGACATT ACTGTGTCAT GGGAAGTGGC CACCGACAGC
GGTTTTAGCC AATTAGTCAC TAACGGCCAA ATGATAACGA ATAAAAACCG AGACTATACC
GTTAAAGTTG ACGCTGTCGG ACTTGAAGCG GGCCAACAGT ATTTCTATCG TTTTAAAGCG
GGTGAAACGG TATCTGAAAT GGGTCAAACA CGCACATTAC CTGAAGGTAG CGTGGCGTCT
GTTAAGTTGG CGGTAATGTC ATGCGCTAAC TTTCCTGCTG GATATTTTAA TGTGTATGAA
ATGGCCGCAC AGCAAAATGA TTTGGATGCT GTCGTGCACT TAGGCGATTA CTTATATGAG
TATGCTCGTG GTGAATATGC CAGTGAACAT GCTGTCGAGC TTGGGCGTGA AGTGTTGCCA
GCCGGTGAAT TATTTTTATT AGACGACTAT CGCACCCGTT ACAGCCAATA TCGTAGTGAT
GCGAGCTTAC AAAAACTACA TGCCAAAGTA CCGTTTATTA CCGTGTGGGA TGACCATGAA
GTGGCCAATG ATACGTGGAA AGACGGTGCT GAAAATCATA ATGATGGAGA AGGGGATTTT
GATCAACGCA AACAAGCCGC ACTACAAGCT TACTTTGAAT GGCTGCCAAT TCGTCCATGG
AGTGAAGGTA ACCATGAAGA AATTTACAGA AGTTTTAATT ACGGTAACTT GGTTGATTTG
CACATGCTCG ATACTCGGGT ATTGGCTCGC GATAAACAAT TAGAATATAG CCAATATATT
GATGCGACCA CAGGTGCATT TAACAGCAGC ACATTTTTAG CTGATGTAAC CGATACTGAC
CGCACCCTGT TAGGCCAGAC TCAACTATTG TGGTTACAAC AAACCTTATT GCAGTCTACT
GCTAAGTGGC AAGTATTAGG TCAACAAGTG TTAATGGGCA AAATGTTAAT GCCAGCGGCC
ATTGCGACTC TGCAAATGAG TATTCCGCAG TTTGCTGAAC TTGCAGGATT AGCGCAGCTA
GCGGGCCGTG CTCAAGCGGG CGACCCAACA TTAACCGCAG AAGAGTTAGC TTACTTACAA
GCGAATCAAG CCAAGCTGAC GCCAGAAGTT ATTGCATTGC TACAGCTGCC AGCCATTCCA
TACAACTTAG ATGCGTGGGA CGGTTACGCC TACGAGCGCG AAGTGATTTT AGCGACAGCA
AAGTCGTTAC AGCATAACTT GGTGGTTATT GCCGGAGATA CTCATAATGC CTGGGCCAGC
GATTTAACCG ATAGTGGTGG TGATATTGTC GGAATAGAAT TTGCCACAAG CTCGGTGTCA
TCCCCCGGGC TTGAGTATTA CTTAGGCTTG TCTGATGCTG AAATGCCGGC AACTGAAGCG
GCAATAGTCG GTTTGGTCGC CGATCTTAAA TACGCTAATT TGAAGGATCG TGGTTACTTA
TTACTGACAT TTACCGAAAA TGAAGTCCGC AGTGATTGGC AATACGTCGA TACTATTTTA
GATAAGACAT TTGTTAAGTT AGATGCTCGT GGTTACAGTG CTACCAGTAC CGCTGGTAGC
CCTAAAGTCA CGCCGGTGTC GTAA
|
|---|
| Protein sequence | MKRFVTRRDF LAMSAKGAGA VVVSYGLMGC SSDDDDVVSG QFLQGIASGD PAADAVILWT
RVTPDVEGDI TVSWEVATDS GFSQLVTNGQ MITNKNRDYT VKVDAVGLEA GQQYFYRFKA
GETVSEMGQT RTLPEGSVAS VKLAVMSCAN FPAGYFNVYE MAAQQNDLDA VVHLGDYLYE
YARGEYASEH AVELGREVLP AGELFLLDDY RTRYSQYRSD ASLQKLHAKV PFITVWDDHE
VANDTWKDGA ENHNDGEGDF DQRKQAALQA YFEWLPIRPW SEGNHEEIYR SFNYGNLVDL
HMLDTRVLAR DKQLEYSQYI DATTGAFNSS TFLADVTDTD RTLLGQTQLL WLQQTLLQST
AKWQVLGQQV LMGKMLMPAA IATLQMSIPQ FAELAGLAQL AGRAQAGDPT LTAEELAYLQ
ANQAKLTPEV IALLQLPAIP YNLDAWDGYA YEREVILATA KSLQHNLVVI AGDTHNAWAS
DLTDSGGDIV GIEFATSSVS SPGLEYYLGL SDAEMPATEA AIVGLVADLK YANLKDRGYL
LLTFTENEVR SDWQYVDTIL DKTFVKLDAR GYSATSTAGS PKVTPVS
|
|---|
| |