Gene Sfri_3318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3318 
Symbol 
ID4280220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp3964372 
End bp3965433 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content44% 
IMG OID638136139 
Productribosome-associated GTPase 
Protein accessionYP_751993 
Protein GI114564479 
COG category[R] General function prediction only 
COG ID[COG1162] Predicted GTPases 
TIGRFAM ID[TIGR00157] ribosome small subunit-dependent GTPase A 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00153777 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTAAAA AGAAACCCCT AAGCCAAGGC CAATTACGCC GAATGCGAGC GAATCAAACC 
AAGCGATTAA AGCGCGGTGA CGATGACACT CAACAAGCTG AGTTACAGGA TAACCTCTTA 
GGCCCTGAGC AAGCTGGAGT GGTTATTTCG CGCTTTGGTC AGCATGCCGA CATAGAAACG 
GCTGACGGTA CTGTATCGCG GTGTAATATT CGCCGGGCAG TAACCAGTTT AGTTACTGGT 
GATAAAGTGG TGGTCAGACT AGCGACAGAA GTCCAATCTG GCTCCAGTAT CGGTGGTATT 
GTCATCGCCG TTCACCCTCG AAAATCTTCT TTAACTCGAC CAGATTTATA CGACGGCGTA 
AAAATTATTG CCGCCAACAT CGATCAAATC TTAATTGTGT CATCGGTATT GCCCAGCTTT 
ACCACTCAAA TTATTGACCG ATACTTAGTG GCTTCAGAAG ATACTGATAT CACACCAATC 
ATCATTTTGA ATAAAATTGA TTTATTGGAT GAGACTAATC GTGAAGAAAT TGAAACAGCC 
TTAACGCGTT ACCAAAATAT TGGTTATCAA GTTTTCCGCG TCAGTAGTCA CACAGGTGAA 
GGCGTTGAAG ACCTAAAAGA ATTACTCAAT AACAGCGTCA GTGTTTTTGC TGGTCAGTCT 
GGTGTTGGCA AGTCGTCATT AATCAATGCA TTAATGCCTG ATGCTGAACT ATTGATCGGA 
GATGTGTCTG GCAACTCAGG TTTAGGACAG CACACTACGA CCACGGCCAA ATTACTGCAC 
TTTGTCAGCG GCGGTGATTT AATCGATTCC CCCGGTGTTC GCGAATTTGC CTTATGGCAT 
TTAGATGCCA TAAGAGTGGG CTGGTGTTTT GTTGAGTTTA GAGACTTTTT AGGATCGTGT 
AAGTTCCGTG ATTGTAAACA TGGCGACGAC CCAGGTTGTG CTTTACAGCA GGCTTTAGCT 
GATGGAAAGA TAACCCAAGA CCGCTTTAGT AATTACCAAC GTATTATTGC CAGTTTAGAC 
GAGCAACGTC ATGCACGACA TTTCCGTGCT ATTGATGAAT AA
 
Protein sequence
MSKKKPLSQG QLRRMRANQT KRLKRGDDDT QQAELQDNLL GPEQAGVVIS RFGQHADIET 
ADGTVSRCNI RRAVTSLVTG DKVVVRLATE VQSGSSIGGI VIAVHPRKSS LTRPDLYDGV 
KIIAANIDQI LIVSSVLPSF TTQIIDRYLV ASEDTDITPI IILNKIDLLD ETNREEIETA 
LTRYQNIGYQ VFRVSSHTGE GVEDLKELLN NSVSVFAGQS GVGKSSLINA LMPDAELLIG 
DVSGNSGLGQ HTTTTAKLLH FVSGGDLIDS PGVREFALWH LDAIRVGWCF VEFRDFLGSC 
KFRDCKHGDD PGCALQQALA DGKITQDRFS NYQRIIASLD EQRHARHFRA IDE