| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3242 |
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| Symbol | |
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| ID | 4280144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3878647 |
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| End bp | 3880017 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638136060 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_751917 |
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| Protein GI | 114564403 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3014] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0125577 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAGAA CATTCTGTAT TGGGTTGACT CTCAGTCTTG GCCTATCTGG TTGTGCCTTT
AATAGTGTGT TTGTTAACTA TCCATCGCAA ATAGCGCCAT ACAAGCAACA ACTCAATAGC
GATTCACCAA CAGCAAAAAT CACTGATTTG GCCGACAATA TTAGCGGCAA TGATGGCTTA
CTTTACGCCC AAGAATCTGG GCGTATTATG CAGATTGCGG GTGACTTTAC TGGCAGTAAA
ACCTATTACC AGCAAGCCAT TGACGATTAC CAGATTTTCG ATGATAAAGC CATCGTGAGT
GCGAGTAAGT TAGGCGCTGG GGCAAGCAGT ATTTTACTCA ACGATAATGC CATTCCTTAC
CGAGGCCCAG GTTATGAGCG CATTATGTTG CATCAATATC AGGCGTTTAA TTATTTATTT
AGTGGTGATG CTCAAGGGGC ATTAGTAGAA GTTCGCCGCA GTAATGAACT GCAAAGCATG
GAACAAGCAC GCTATCAGAA ATCACAAAAG TCAGTGCAAG ACATGGCCAA TGGCACCATT
GACGCGCAAG TAGCCCAATT AAGCAAAGAA GCCGGCAATG TCACCAGTTC ATTTCTAAAC
GCTTACAGCT ATTACACTAC TGGTTTGTTG CACGAACTCG CCAGCGAGCC TAATGATGCG
TTTATTGATT ACCGAAAAGC AGCACAAATT ACCCCAGACA ATGTGTATTT ACAGCAAGAT
TTAGTCCGTT TAGCTAAACA ACTGGGGATG CCTCAATACG ACGAGTTTAA ACGTCGCTGG
GGAGAGGCGG TAATGCCTAC ACCCGATCAA GGCCAAGTTG TATTTATTAT TGAACGTGAT
TTTGTACCAG AAAAACAGAG TATTACGGTA CCTTTTCCAC TTAACGGTAA TATTCAATCA
GCATCATTAG CGACCTATCA GCCACAACGT CTGTTAATGA ATAACAGCCA AATCCAAGGA
TTAGGCACGC CACTAACAGC ACAAACCATT GCTAACATTG ACGCGCTAGC AATTAATGCA
TTAAAAGAAG ATTTACCCGC TGCGCTGTTT AGACAAGCAG CAAGAATTTA TGCTAAATAC
CAAATGAATC GCAGTGTACA AAGCAGCAGC CAACGAGCCA ACAATCAAGT AGATGCTGCT
GCGATGGTAA TGCAAATATT TAATGTTATC ACCGAGCAAG CCGACCGTAG AAGTTGGTTA
ACCCTGCCTC GCCAGGCTCA AATTGCTCGA CAATTTATCG ATGCCGGCAG CTATAATGTT
CGCTTAAATA GCAGCCAAAA TGTAAATATT GACGTAAAAC CAAACCGTAC AACATTAATT
TGGGCAATAG AGACTGGAAA TCGTACCCGT TTTTATTCGA TAATCATCTG A
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| Protein sequence | MLRTFCIGLT LSLGLSGCAF NSVFVNYPSQ IAPYKQQLNS DSPTAKITDL ADNISGNDGL
LYAQESGRIM QIAGDFTGSK TYYQQAIDDY QIFDDKAIVS ASKLGAGASS ILLNDNAIPY
RGPGYERIML HQYQAFNYLF SGDAQGALVE VRRSNELQSM EQARYQKSQK SVQDMANGTI
DAQVAQLSKE AGNVTSSFLN AYSYYTTGLL HELASEPNDA FIDYRKAAQI TPDNVYLQQD
LVRLAKQLGM PQYDEFKRRW GEAVMPTPDQ GQVVFIIERD FVPEKQSITV PFPLNGNIQS
ASLATYQPQR LLMNNSQIQG LGTPLTAQTI ANIDALAINA LKEDLPAALF RQAARIYAKY
QMNRSVQSSS QRANNQVDAA AMVMQIFNVI TEQADRRSWL TLPRQAQIAR QFIDAGSYNV
RLNSSQNVNI DVKPNRTTLI WAIETGNRTR FYSIII
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