Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1335 |
Symbol | |
ID | 4278009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 1588578 |
End bp | 1589321 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134110 |
Product | short chain dehydrogenase family protein |
Protein accession | YP_750026 |
Protein GI | 114562513 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00551908 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACAG CGACAGCGAT GATTATTGGT GCCAGCTCGC AACTGAGCCA AGCATTAGCC AGACAGTTAT CTGCACAGCA AGTTTCGCTA GTGCTTTTTG TTAACGACCC TGAATCACTT AACGAGTTTA GTCAAAGTCT GCCAGGTGAA GTGAGTGTTT ATCCGTTAGC GATTGATCAA CCTGATACGC TAATTACACA GCTTAATACT GCTTGGACCA AACATAATGG CGCCCATTTG GTGATTGTTA ATACTGGTGT CAATGACTAC GACCCTTCTC TGCCTTGGGC AATTGATAAG CTCGCCATCG AAATTAACGT TATGGGATTT GCTGCTGCCA ATAACTGTAT TTTTAAATTA ATGTGCGATC AAGGTTATGG CCAACTAGCC GCCATTAACT CAATAGCCGG TCAACGTGGA GGCCCTAATG TGGCTTATCA TGCCTCCAAA GCCTTTGCTG AAAATTACCT GCAAGGCTTG AGTATGCATG CGCAACGATT GAAGCTGCCT ATTACCATTA GTGATATTCA ATTAGGGTTA TTTGATAAAG CCGTTCATTT GAATACACAA CTGCTCCTGT CGCCTATCGA TAAAGTGGCT AAACAAATCA TCACGGCATT ACAAAAAGGC AAACGGCGAG TTTATGTCAC TAAACGCTGG CGTGTTGTCG CTTGGATAAA TCGTTTATTA CCAGAGTACA TTTACAATAC CCGCCATTGG AAACCGCGTA AAAAGTCTCA ATAA
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Protein sequence | MSTATAMIIG ASSQLSQALA RQLSAQQVSL VLFVNDPESL NEFSQSLPGE VSVYPLAIDQ PDTLITQLNT AWTKHNGAHL VIVNTGVNDY DPSLPWAIDK LAIEINVMGF AAANNCIFKL MCDQGYGQLA AINSIAGQRG GPNVAYHASK AFAENYLQGL SMHAQRLKLP ITISDIQLGL FDKAVHLNTQ LLLSPIDKVA KQIITALQKG KRRVYVTKRW RVVAWINRLL PEYIYNTRHW KPRKKSQ
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