Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0503 |
Symbol | |
ID | 4278583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 569378 |
End bp | 570421 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638133260 |
Product | porin |
Protein accession | YP_749202 |
Protein GI | 114561689 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00290192 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CCTTAATCTC TGCATCGGTA GCATCTGTAC TTACATTAGT TTCTTTCGCT ACACTTGCTG AAGGCCCAAG TTTCTATGGT CGTTTAGATT TAGCAGTATC GAATTCTGAT CAAGGTGCCA CTACTCAAAA CCGTAAAGAA GGCACAGTAT TAGAAAACAA CTTTTCTAAC TTGGGTGTTA AAGGTAGCGA GAAATTTGCT AACGGTATCG AACTGTTATA CCAAATGGAA TTCCAAGTTG AAAATACTAC TCAAACTGAA GGTAAGAATG GCAGTGACGA AGTTGTATTT AAAGCACGTA ACACATTCTT AGGTTTAAAA AGTGACGCTG GTACTGTGTT AGTAGGCCGT AACGATACGG TATTTAAACA GTCTGAAGGT GGCATCGATT TATTCGGTAA CTTTAACGCC GATATCGATC GTATGATTGG CGGCCAGTTA CGTAAAGCTG ACGGTCTTTG GTACTACTCA CCTGTTATTG GTGGTTTAGT CACATTAAAC GCGACTTATT TAATGGAAGA CAACTACACA GATGATGCTG GTAAAGAATC ATATGATGAT CAATATGCAT TAAGTGCAAC TCTTGGTGAT AAAGGTCTTA AAGCACACCC TTACTACGTA GCTGCAGCTT ATAACACTAT TGGTGGCATT GATGCTTACC GTGGTGTGGC ACAAGTTAAG CTAGGTGAGT TCAAGCTTGG TGGTTTATAC CAAAACACTG AAAGCCAAAC ATCTGATCAA GAAGGTGATT CTTTCTTCCT TAACGTATCT TACAACCTAA ACGGCGTAAA CTTAAAAGCT GAATACGGTC AAGATGAAGC TGGTTTTGGT AGCTACTACA AAAATATTAA AGAAGCGACT GGTACAGACG TAAACATCAC TCAAATTACT GTGGGTGCTG ACTACCGTAT ATCTAAGTCA ACGTTAGTTT ATGGTCACTA TGCTATGTAT GAAGGCGACC ATAAAGTTGG TACTGCTACA GTTGATTTAG AAGATGACAA CATCTTCACT GTCGGTGCTC GTTACGACTT CTAA
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Protein sequence | MKKTLISASV ASVLTLVSFA TLAEGPSFYG RLDLAVSNSD QGATTQNRKE GTVLENNFSN LGVKGSEKFA NGIELLYQME FQVENTTQTE GKNGSDEVVF KARNTFLGLK SDAGTVLVGR NDTVFKQSEG GIDLFGNFNA DIDRMIGGQL RKADGLWYYS PVIGGLVTLN ATYLMEDNYT DDAGKESYDD QYALSATLGD KGLKAHPYYV AAAYNTIGGI DAYRGVAQVK LGEFKLGGLY QNTESQTSDQ EGDSFFLNVS YNLNGVNLKA EYGQDEAGFG SYYKNIKEAT GTDVNITQIT VGADYRISKS TLVYGHYAMY EGDHKVGTAT VDLEDDNIFT VGARYDF
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