Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3399 |
Symbol | |
ID | 4255012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 4028086 |
End bp | 4030269 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638124080 |
Product | TonB-dependent receptor |
Protein accession | YP_739437 |
Protein GI | 114048887 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.186836 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAGC TTAGCCCTAC ACGCCTCAGT ATATTGGCCT GCGCATTAAC CACCGCCTTC AATGCCCAAG CCAATTCACC CACTCAAGCC CCCGCAAAAA TAGAACAGAT CAGTATTTTC GGCAGTAAAA ATCCTCTCGA TACCACGCCA GGTAGCGCCC ATCAAATTAC CGAAGCTGAA TTAGAAACCT TTAAATATTC CGATATTATG CGCACCTTGG CCTCTGTGCC CGGCGTCTAT ATTCAAGAAG AAGATGGTTA TGGTCTGCGC CCAAACATTG GTATGCGTGG CACGGGACAA AATCGTTCTG AAAAGATTAC CGTGATGGAA GATGGTGTGC TCGCCGCTCC CGCCCCCTAT GCCTCCCCAG CGGCTTACTA CTTCCCCACC TCAGGTAGAA TGCAATCGGT TGAAATCCTT AAGGGAAGCT CAACGGTAAA ATATGGCCCC CGCACCACAG GTGGAGTGAT TAACATGTTG TCTCGACAAA TTCCTCAAGA GACATTAGCC GGCAAAATTG ATCTGGCCTT AGGCCAAGAT GGCTTCGGTA AATTACACAC CTATGCGGGC GGACAAGGCG AACGCATTGG CGCAGTGGCC GAGATCTATC GCTATCAAGC CGACGGATTT AGAGAGATAA ACACGGTCGG CGGCGACACT GGCTTTACTA AAAATGATGC CTTAGCCAAG GTCAGAGTGA ACACCGACAG TACGGCCACA TACCAGCAAT CCATTGAACT CAAATTGAAA TTTGCCGATG AGACCTCTAA CGAAACCTAT ATGGGTCTGA CCGATGCGGA TTATCAGGCC TCGCCCTATA GTCGCTATTC TGCCTCACAA AAAGATCAGA TGACCACAGA GCATAAGCAA GTACAGCTCA ACCATATTAT CGATTTTAGC GACACACTAA GCCTTAGCAG CATTGGCTAT TACAATGATT TTCATCGTAA TTGGTATAAG GCCGACAAGG TTGGTGGTGA ATCATTAAGT GGTAAAGGGA TCCAAAATGC TGCCGACTTT GACGCGGGTC TGCTCTCTGA GCTTGAGGTC AATGTCAAAG CCAATAATCG CAGTTACCTC GCCCAAGGCA TCCAAACGGA ACTCAATTGG TTACTCGGGG ATCACGACCT CGCCTTTGGT CTTCGCTACC ATGAAGATGA AATGGACAGA TACCAATGGG CCGACAGTTA TGCAATGGAC GCCAACAGTG TCATGTTACG CACTAAGAGT GGTGTCCCGG GCACCGACTC TAACCGTGTC GATAGCGCCA CGGCATTTGC GGCCTATGTG CAGGATAAAA TCAGCCTAGA TGCTTTCACC ATTACCGCCG GCCTGCGCTG GGAAGATGTC GAAACCCAAC GCCGCGATTG GGGCAAGAAG AACCCCGGCC GCGAGGGGAA TCCCGATAAA CAGGTTGAAA GCCAGTTCAA TGCACTGCTA CCTTCGTTAT CAGCAACTTA CCAGATTAAT GAGCAAGTAT TACTTCTGGC TGGGGTACAG AAAGGTTTCT CGCCCGCCGC GCCCGGCAAC GCTAAGGGGC AAGAAGAACA AAGCTGGAAC TATGAGGCTG GCGTTCGCTA CCATCAAGAT GCATTTAGTG CAGAGTTAAT CGGTTTCTAC AGCGATTACA GTAATATGCA CGGCAACTGC ACGGCGGCGC AGGGTTGTGA TGACGCTAAA CTCGACAACC AGTACAACGC AGGCGAAGTG GAAGTCAAAG GCCTCGAACT CAGCCTCGCC CACGAGTTTA ACCGCACCGG AGCGATGAGT TTTCCAGTCA AACTCGCCTA CACCTACACG GATGCCGAGT TTGGCAATAG TTTCGAATCT GAGTTTGAAA CTTGGGATAA GGTTGAAGCG GGTTACAAGT TAAGCTATCT ACCTGAAAAC CAATTGTATA TTTCAGCAGG TGTGCAATCG CAGAGCTGGC AAGTCACAGT GGCGGCACGT TATACCGATG AGATGCGAAC CAAAGCAGGT ACGGGCGCTA TTCCCGCAGA TGAAGTGATT GAGGCCAAAA CCTTAGTGGA CTTGTCGGCG CGTTACTTTG TCACCCACAG TCAGGAAGTG TACTTAACCG TAGACAACCT CTTAGATGAA ACCTATATGA CGACGCGAGT ACACGGCTCT ATTTTTGCCG GAAAGCCTCA AACGGTCACA CTCGGTTACA GCTATAAATT TTAA
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Protein sequence | MTQLSPTRLS ILACALTTAF NAQANSPTQA PAKIEQISIF GSKNPLDTTP GSAHQITEAE LETFKYSDIM RTLASVPGVY IQEEDGYGLR PNIGMRGTGQ NRSEKITVME DGVLAAPAPY ASPAAYYFPT SGRMQSVEIL KGSSTVKYGP RTTGGVINML SRQIPQETLA GKIDLALGQD GFGKLHTYAG GQGERIGAVA EIYRYQADGF REINTVGGDT GFTKNDALAK VRVNTDSTAT YQQSIELKLK FADETSNETY MGLTDADYQA SPYSRYSASQ KDQMTTEHKQ VQLNHIIDFS DTLSLSSIGY YNDFHRNWYK ADKVGGESLS GKGIQNAADF DAGLLSELEV NVKANNRSYL AQGIQTELNW LLGDHDLAFG LRYHEDEMDR YQWADSYAMD ANSVMLRTKS GVPGTDSNRV DSATAFAAYV QDKISLDAFT ITAGLRWEDV ETQRRDWGKK NPGREGNPDK QVESQFNALL PSLSATYQIN EQVLLLAGVQ KGFSPAAPGN AKGQEEQSWN YEAGVRYHQD AFSAELIGFY SDYSNMHGNC TAAQGCDDAK LDNQYNAGEV EVKGLELSLA HEFNRTGAMS FPVKLAYTYT DAEFGNSFES EFETWDKVEA GYKLSYLPEN QLYISAGVQS QSWQVTVAAR YTDEMRTKAG TGAIPADEVI EAKTLVDLSA RYFVTHSQEV YLTVDNLLDE TYMTTRVHGS IFAGKPQTVT LGYSYKF
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