Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2782 |
Symbol | |
ID | 4258082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3295978 |
End bp | 3297534 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638123460 |
Product | diguanylate cyclase |
Protein accession | YP_738824 |
Protein GI | 114048274 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.32181 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00903713 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGGATT CCAACGCGAC AGTGACACAG CTGGCATTGC TTCAGCAAAA ACTTCACTCG GCAAAATTGG CCCTCGATGA AGTAAACGAA GATAGGAATG CTAAGTTACA GACACTACTC CAATTTATTG GCCATTTAAG TCTTGCCTGC AAAGGGCAAA ATTTAGAACT GGATAATAAA CTTGCTAAAC TTCGCCATAA TTTAAATACC TTTGAGCGAG TCGATGAAGC ATTGCCGGAG TTGGTTGATG TTGAACGTCT ATTAAAGGGT CAGTACAACC ATGTAATGGT GCAACTTGAA GAAAGCCGAA CAGGGCTTGC ACAGGTGGTC CGCCAGATCC AACGGGTTAA CTCGGCGCCC GAAAAACTCA AAAAAGAAGT TAATTACTTT AAGCAGGATC TCTCCAAACC CTTCCACACT GTGTGGGAAT ATATCCCTAA AGTTAAACAA ATCATCGGCT TCTACGATAT TATCCTGCAG CAACAGTTCA ATGAGACGGA AAAGTTAGAT GTCTTGCCAA AACACAGGCA ACTTGCCCAT GAACTCGCGC AGATGATTTC GGAAATTGAA TTTCGTAAAG ATCAACGCGA CCAAGTGCTC GTAATTAAAG AGCTGCTGGC ATCGGAAGTC GAAATCGACA CCTTGCTCGA AGCCTACCAA ACCATTTTAT CCCTACTGCT CGACAACATC GCCCGCGAAA AATCGGCCTC ACAAGAGTTT TTATACGCGC TAAACGATGC CTTAGCCGCT GTGCGTGAAG TGGTGAGTGA ATCCTACAAT CACAACCAGC GCAGTTTTCA GCTAAAAACC CAGCTCAACC GTGAAATCAA TTCGCGTGTG GATAATGTGG GTGAAGCCAT TATCGACACC GATGATATTG TCGATCTCAA GGCGCAATTG ACCGAACAGC TCAACTCAAT CCGCTCAGCC CTCGCCCGCA AAGAGGCGCT AGAGCAACGG GAACAAGCCT TACTGCGCAA ATCGATGGAG ACTATGCGCA AAGAGCTTAA CGAGCTAAGC AATGAGGCCA ACACCTATAA AGAGCGACTC TTTGAGCAAC AAAAACTCAA TCTATTGGAC AGCTTAACCC AATTACCTAA CCGTGCCGCC CTCGAAGAGC GCATGGAACT TGAGTATCGT AATTATCAGC GCCACAAAAC CCCGCTATGG ATTGCGGTGG CAGATATCGA CCACTTTAAG AGTATCAATG ACAGCTTTGG CCACAGCACG GGCGATAAAA CCCTGCAGGT CATCGCCATG GCATTAAAGA ACTCTCTACG GGATACCGAG TTTGTCGCCC GCTACGGCGG CGAAGAGTTT GTGCTCATCC TGCCTGATAT TGGCGGAGGC GACATTGCTC AACTTTTAAA CAGAGTCCGT GAAAAAGTAA AAAATATTCC ATTTAAATTT AAAAATCAGA GAATTACAGT TACAGTATCT ATAGGGGCTG CGCAGGTTAT GGGGAACGAG CTCATACATG AAACCTTCGA GCGCGCCGAT GCAGCACTCT ACAAAGCAAA ACATGAAAGC AGAGACAGGG TTGTGATTGA CGTATAA
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Protein sequence | MKDSNATVTQ LALLQQKLHS AKLALDEVNE DRNAKLQTLL QFIGHLSLAC KGQNLELDNK LAKLRHNLNT FERVDEALPE LVDVERLLKG QYNHVMVQLE ESRTGLAQVV RQIQRVNSAP EKLKKEVNYF KQDLSKPFHT VWEYIPKVKQ IIGFYDIILQ QQFNETEKLD VLPKHRQLAH ELAQMISEIE FRKDQRDQVL VIKELLASEV EIDTLLEAYQ TILSLLLDNI AREKSASQEF LYALNDALAA VREVVSESYN HNQRSFQLKT QLNREINSRV DNVGEAIIDT DDIVDLKAQL TEQLNSIRSA LARKEALEQR EQALLRKSME TMRKELNELS NEANTYKERL FEQQKLNLLD SLTQLPNRAA LEERMELEYR NYQRHKTPLW IAVADIDHFK SINDSFGHST GDKTLQVIAM ALKNSLRDTE FVARYGGEEF VLILPDIGGG DIAQLLNRVR EKVKNIPFKF KNQRITVTVS IGAAQVMGNE LIHETFERAD AALYKAKHES RDRVVIDV
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