| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3271 |
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| Symbol | |
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| ID | 4253839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3902971 |
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| End bp | 3904323 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638119911 |
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| Product | peptidase Do |
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| Protein accession | YP_735396 |
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| Protein GI | 113971603 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.137957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000509076 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACGA AACTATCTGT ACTTTCAGCC GCAATGTTAG CCGCAACTCT GACAATGATG
CCCGCTGTCT CACAGGCGGC TATTCCGCAA TCTGTTGAGG GTCAATCCAT TCCAAGTCTT
GCGCCTATGT TAGAGCGCAC GACCCCCGCC GTGGTTTCCG TGGCGGTATC TGGCACGCAC
GTCTCCAAAC AACGTGTACC CGATGTGTTC CGTTATTTCT TCGGCCCCAA TGCACCGCAG
GAACAAGTAC AAGAACGCCC TTTTAGAGGC TTAGGCTCAG GCGTAATAAT CGACGCGGAT
AAAGGTTATA TCGTCACCAA CAACCATGTG ATCGACGGTG CCGATGATAT CCAGGTCGGT
CTGCACGATG GCCGTGAAGT CAAAGCCAAG CTGATTGGTA CCGACTCAGA GTCCGACATT
GCCTTGCTGC AAATCGAAGC GAAAAATCTA GTCGCAATCA AAACCTCAGA TTCTGATGAA
CTGCGCGTGG GTGACTTTGC CGTCGCCATT GGTAACCCCT TTGGTTTAGG TCAAACCGTC
ACATCAGGGA TCGTCAGCGC CCTAGGCCGT AGCGGTTTAG GCATTGAAAT GCTTGAAAAC
TTTATCCAAA CCGACGCTGC GATTAACAGC GGCAACTCGG GTGGTGCGCT AGTAAACCTG
AAAGGTGAGC TGATCGGTAT TAACACCGCC ATCGTAGCGC CTGGCGGTGG TAACGTGGGT
ATCGGTTTTG CGATCCCCGC CAATATGGTG AAAAACCTCG TGGCACAAAT TGCCGAGCAC
GGTGAAGTGC GCCGTGGCGT ACTGGGGATT TCGGGCCGCG ACCTAGATAG CCAACTCGCC
CAAGGTTTTG GTTTAGATAC CCAGCACGGT GGGTTTGTGA ATGAAGTTAC CGCGGGCAGC
GCAGCTGAAA AAGCCGGCAT CAAAGCGGGT GATATTATCG TCAGTGTCGA TGGCCGTGCG
ATTAAATCGT TCCAAGAGCT GCGTGCGAAA GTCGCGACTA TGGGCGCTGG TGCTAAGGTT
GAACTGGGAC TTATCCGCGA TGGCGATAAG AAAACCGTGA ATGTCACCTT AGGTGAAGCA
AGCCAAACCA CTGAAAAAGC TGCAGGTGCT GTGCACCCCA TGTTACAAGG TGCCTCGCTA
GAAAACGCTT CGAAAGGGGT GGAAATTACT GAGGTGGCCC AAGGCTCGCC TGCGGCAATG
AGTGGCTTAC AAAAAGGCGA TGTGATTGTC GGTATTAACC GTTCGGCGGT GAAAGATCTG
AAATCACTCA AGGAGCAGCT CAAAGATCAA GAAGGCGCTG TCGCCCTGAA GATCCTCCGT
GGTAAGAGCT TGTTGTACTT AGTGCTGCGT TAA
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| Protein sequence | MKTKLSVLSA AMLAATLTMM PAVSQAAIPQ SVEGQSIPSL APMLERTTPA VVSVAVSGTH
VSKQRVPDVF RYFFGPNAPQ EQVQERPFRG LGSGVIIDAD KGYIVTNNHV IDGADDIQVG
LHDGREVKAK LIGTDSESDI ALLQIEAKNL VAIKTSDSDE LRVGDFAVAI GNPFGLGQTV
TSGIVSALGR SGLGIEMLEN FIQTDAAINS GNSGGALVNL KGELIGINTA IVAPGGGNVG
IGFAIPANMV KNLVAQIAEH GEVRRGVLGI SGRDLDSQLA QGFGLDTQHG GFVNEVTAGS
AAEKAGIKAG DIIVSVDGRA IKSFQELRAK VATMGAGAKV ELGLIRDGDK KTVNVTLGEA
SQTTEKAAGA VHPMLQGASL ENASKGVEIT EVAQGSPAAM SGLQKGDVIV GINRSAVKDL
KSLKEQLKDQ EGAVALKILR GKSLLYLVLR
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