| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2681 |
|---|
| Symbol | |
|---|
| ID | 4253252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3198316 |
|---|
| End bp | 3199359 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638119316 |
|---|
| Product | porin |
|---|
| Protein accession | YP_734809 |
|---|
| Protein GI | 113971016 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.201946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.861695 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TAATCTTAAC CGCTTCAGTA TTTGCCATTT CCGCCTTACC CGTGTTGGCC
GATGAGTCAC CCTCTGTGTA TGGCCGACTG GATTTATCCG TTACCCATTC CGAATTAAGT
TCCACCGTTT ATAGCGGTAC CAGCGGCGTT AAGGTGGGCG AGAGCGGGAC TTATCTTGAA
AACAACTCAT CTAATATTGG GGTTAAAGGT AAATCAGCTA TCAGTGATGG CATTAATGTC
GTCTACAAGA TGGAGTTTGG CGTAAACAAT ACCTCTAATC GGGCGAATGA CTCCAGTAAA
GTATTCTCGG CGAGAAATAC TTATCTGGGC GTAGAAACGG CCTACGGCAC CTTGCTTGTC
GGTCGAAATG ATACGGTTTT CAAAACCGCC GAAGGTAAAG TCGATATTTT TGGTACGACC
AATGCGGATA TTAATCAATT AGTCTCTGGT CAGACGCGTA GTGCCGATGG TGTTTGGTAT
TACTCGCCTA AGTTATTCGG CCTGATGGAT ATCAACGCGA CTTATTTATT ACAGGATAAC
TATGGGGCTG ATAATGAGTT GTATGCCTTA AGTACCACGC TGGGTGATAA AGACCTTAAA
AAGAACCCTT ATTATTTTGC TGCCGCCATT AATAAAGGGA TCGCCAATAT CGATGCCTAT
CGTTTTGTGA CCCAAGTTAA GCTGGGTGAC ATGAAGCTGG GTGGGATTTT CCAACATACC
GAAAGTTTAA AATTTTCCAA TATGGAAGGT GACTCCTATT TTATTAACGC AACCTATGAC
CTATGGGGAG CGACATTAAA AGCGGAGTAC GGTCAGGATA GTTCGGGTTT GGGTGGCTAT
TTCTCTAAAC TCGTTGGCCC AAATGAGCAA ATAACGGACG TGGATATCAG TCAATTTACC
CTTGGCGCGG ATAAGAAACT GACCAAATCG ACCCGCGTTT ATACCCATTT TTCTATGTAT
GAAGGCGAGT ATCAAATGTC TGGCATAACC CAAGACATTG GCGACGATAA GGTTATTACT
GTCGGTGTTC GCTACGTTTT TTAA
|
|---|
| Protein sequence | MKKVILTASV FAISALPVLA DESPSVYGRL DLSVTHSELS STVYSGTSGV KVGESGTYLE
NNSSNIGVKG KSAISDGINV VYKMEFGVNN TSNRANDSSK VFSARNTYLG VETAYGTLLV
GRNDTVFKTA EGKVDIFGTT NADINQLVSG QTRSADGVWY YSPKLFGLMD INATYLLQDN
YGADNELYAL STTLGDKDLK KNPYYFAAAI NKGIANIDAY RFVTQVKLGD MKLGGIFQHT
ESLKFSNMEG DSYFINATYD LWGATLKAEY GQDSSGLGGY FSKLVGPNEQ ITDVDISQFT
LGADKKLTKS TRVYTHFSMY EGEYQMSGIT QDIGDDKVIT VGVRYVF
|
|---|
| |